Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e11
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.0  
M25478-1|AAA27992.1|  168|Caenorhabditis elegans collagen protein.     31   1.0  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    30   1.8  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   3.1  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   4.1  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    29   4.1  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    28   7.2  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    24   7.9  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
 Frame = -3

Query: 616 PSHKGQCGARHHQ--------EGLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAP 461
           P   G  G  HHQ        +GL  P GAP    P    P G+    A  G   PP  P
Sbjct: 117 PGQPGVAGPSHHQKQECIKCPQGLPGPAGAPGQ--PGPKGPNGNPGAPAQGGGQGPPGPP 174

Query: 460 RP 455
            P
Sbjct: 175 GP 176


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
 Frame = -3

Query: 616 PSHKGQCGARHHQE--------GLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAP 461
           P   G  G  HHQ+        G   P GAP +  P    P G+    A+ G   PP  P
Sbjct: 115 PGQPGVAGPAHHQQQECIKCPQGAPGPAGAPGN--PGPQGPNGNPGAPAHGGGQGPPGPP 172

Query: 460 RP 455
            P
Sbjct: 173 GP 174


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
 Frame = -3

Query: 616 PSHKGQCGARHHQ--------EGLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAP 461
           P   G  G  HHQ        +GL  P G P    P    P G+    A  G   PP  P
Sbjct: 117 PGQPGVAGPSHHQKQECIKCPQGLPGPAGVPGQ--PGPKGPNGNPGAPAQGGGQGPPGPP 174

Query: 460 RP 455
            P
Sbjct: 175 GP 176


>M25478-1|AAA27992.1|  168|Caenorhabditis elegans collagen protein.
          Length = 168

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
 Frame = -3

Query: 616 PSHKGQCGARHHQ--------EGLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAP 461
           P   G  G  HHQ        +GL  P G P    P    P G+    A  G   PP  P
Sbjct: 104 PGQPGVAGPSHHQKQECIKCPQGLPGPAGVPGQ--PGPKGPNGNPGAPAQPGGQGPPGPP 161

Query: 460 RP 455
            P
Sbjct: 162 GP 163


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
 Frame = -3

Query: 616 PSHKGQCGARHHQEGLLPPG--GAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCP 443
           P   G  G       + PPG  GAP    P    P G   +    G+   P  P P   P
Sbjct: 252 PGTPGPAGPPGPPGPIGPPGQPGAPGSSQPGPQGPPGDPGIDGAPGNPGSPGEPGPPGQP 311

Query: 442 VAF*GGTYEGCSPAMATP 389
            A  GG  + C P    P
Sbjct: 312 GA--GGGCDHCPPPRTAP 327


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
            protein protein16, isoform d protein.
          Length = 1030

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = -3

Query: 685  RSSRSVHRGCCHVFTTCTAIRVTPSHKGQCGARHHQEGLLPPGGAPA-HLFPDDTAPRGS 509
            R SRS  RG   +    ++I ++P    Q    HH +    PG   A +     TAP  +
Sbjct: 892  RQSRSDSRGPPQMSRAASSIPLSPQPTPQHHHHHHSQRPTTPGATRARNYIARATAPSPT 951

Query: 508  SAVHANRGDYSPPLAPRPTY 449
               +     Y PP  P P Y
Sbjct: 952  PYSYDRARAYVPPALP-PGY 970


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -3

Query: 589 RHHQEGLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCPVAF*GGTYEGC 410
           +HH  G  P GG P    P    P G        G + P  AP P+  P    G +  G 
Sbjct: 139 KHHSTGAPPSGGPPGPFDPSGAPPSGGPP-----GLFDPSGAP-PSGGPPGPFGPS--GA 190

Query: 409 SPAMATPRLRDSSAAPP 359
            P+   P   + S APP
Sbjct: 191 PPSGGPPGPFNPSEAPP 207


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 418 EGCSPAMATPRLRDSSAAPPPVSVNVRRYHVQVMGRSG 305
           EG S       +   S APPP+S  VRR+   V    G
Sbjct: 716 EGISKRNRVCSMEGQSPAPPPISFQVRRHRTYVTASLG 753


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 418 EGCSPAMATPRLRDSSAAPPPVSVNVRRYHVQVMGRSG 305
           EG S       +   S APPP+S  VRR+   V    G
Sbjct: 716 EGISKRNRVCSMEGQSPAPPPISFQVRRHRTYVTASLG 753


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
 Frame = -3

Query: 565 PPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPR-PTYCPVAF*GGTYEGCSPAMATP 389
           PP   P   FP  T P  SS         +PP   R P   P        +   P    P
Sbjct: 444 PPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLP 503

Query: 388 RLRDSSAAPPP 356
            +   S+ PPP
Sbjct: 504 PIATPSSVPPP 514


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
 Frame = -3

Query: 565 PPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPT-YCPVAF*GGTYEGCSPAMATP 389
           P   APA   PD   P  +          +P  AP PT   P A         +PA  TP
Sbjct: 69  PEAPAPAPTAPDVQQPGPAPVPVPEPAQLAPQSAPEPTPDAPAAAPVQETPQVAPAPETP 128

Query: 388 RLRDSSAAPPPV 353
                + AP PV
Sbjct: 129 APAPETPAPAPV 140


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 23.8 bits (49), Expect(2) = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 587 PSSGGIAPPWWRPGPP 540
           P   G  PPW RP PP
Sbjct: 50  PPPFGPPPPWDRPPPP 65



 Score = 22.2 bits (45), Expect(2) = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 566 PPWWRPGPPVSG*HCPQREQ 507
           PPW  P PP      PQ++Q
Sbjct: 75  PPWGLPPPPPPPEPEPQQDQ 94


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -2

Query: 377 FKCCPSSR--IGQCAAVPRAGYG 315
           F CCPSSR    +C   P  GYG
Sbjct: 35  FYCCPSSRKFANRCHLPPAVGYG 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,780
Number of Sequences: 27780
Number of extensions: 466037
Number of successful extensions: 1221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)