Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e09
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  31   0.78 
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)                    31   1.4  
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 31   1.4  
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            28   7.3  
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     28   9.6  
SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)                   28   9.6  

>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = -3

Query: 473 LPCTLGPMVYVVLP--LAGSNTTIFLSGSGY--NLSSHSCKLFKLASRQNSFFKNLPSKQ 306
           L C L   V+V+ P    G N+ ++++  GY  NLS    ++   A +Q++      +++
Sbjct: 293 LMCCLFEEVHVIKPGTSKGGNSEVYITCCGYTGNLSPQYHEILYTAYQQDT------AEK 346

Query: 305 LQFSIEKLPRFTLIAICSCHNIFVN 231
           + F +  +PR  L  I  C   F+N
Sbjct: 347 VLFPLNSIPREFLYLIKECQEYFIN 371


>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
          Length = 461

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -2

Query: 636 FHFQRKIALQVSLQNVAKYIVVFVNVSVLNAKKLAKVAFGTFYGSK 499
           F   + +      QN  K +   VN S++NA KLAKV  G  YG K
Sbjct: 393 FKVAKALLAHCETQNKLKKVFEKVNASLMNAAKLAKV-IGNKYGIK 437


>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 361 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWF 492
           S   +ED+LY +   N + L+PA+ + +  I  R Q + C  WF
Sbjct: 10  SYQAYEDELYGQTSPNSLSLQPAS-RLSAKILHRFQNRSCASWF 52


>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +1

Query: 7   EPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 168
           EP +++H        ++  S +D+ + KR+R E G+  +    +N  G +  +K
Sbjct: 166 EPSESSHADKRNRSGELTQSQNDNKEKKRQRKEVGKSVESDNNDNKGGRSRQIK 219


>SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 70  SDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGV 186
           SDDN+   +R + G D      +N NG  +NVK+ + GV
Sbjct: 109 SDDNKGDIDRGDGGNDDSSGGNDNRNG-GYNVKNYDNGV 146


>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 497 SENQNPQGLPCTLGPMVYVVLPLAG 423
           S + NPQ +P T  P + VV+P AG
Sbjct: 47  SVSPNPQAMPMTSRPQLKVVIPSAG 71


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 49  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFN 162
           +K GD+  D + P  E+ ES EDQ+   +N    AA N
Sbjct: 826 KKGGDAGDDPSDPDEEKDESEEDQERKRHNKK--AALN 861


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 49  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 168
           R +G + S DN+    R+E+   ++L P   N  +  +VK
Sbjct: 127 RNLGSTGSSDNRTHYRRIETKAPRRLEPLKPNTASRTSVK 166


>SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)
          Length = 708

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 422 SRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 529
           S  T RLRTPS ++ +ASP +    T+E   V K+T
Sbjct: 162 SASTKRLRTPSKEDIKASPLNNN--TIEQVGVEKST 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,722,334
Number of Sequences: 59808
Number of extensions: 595039
Number of successful extensions: 1684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)