Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e09
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   8.5  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    28   8.5  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    28   8.5  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    28   8.5  

>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  KRKIGDSSSDDNQPKRERVESGEDQQ 123
           K K GDSSSDD+ P+R+R E   D +
Sbjct: 13  KFKRGDSSSDDSGPERDRDEDDSDNE 38


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 397 PDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFG 534
           PD+N+ V    N   T  IGP+++  P      D G  ++A+++ G
Sbjct: 25  PDQNVDVKVQENNVVTTKIGPKLETIPAAKMQDDNGDEEKAENSEG 70


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 395 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 267
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 395 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 267
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 395 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 267
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,028,155
Number of Sequences: 27780
Number of extensions: 443434
Number of successful extensions: 1399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)