Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d23
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.65 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.65 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 76   IIISLKRKYEKKRNNQIYFDV-KMSD 2
            I++S  + Y+K   N+I F++ KM D
Sbjct: 1536 IVVSRNKAYQKVEENEIIFEIYKMGD 1561


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 248 NTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKV 147
           N  FL + +F+         LSD   GL C + V
Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 84  NDPLLFLSRENMKRKGIIK 28
           N P +F+S +N K  GI++
Sbjct: 401 NSPSIFISDDNQKLTGIVQ 419


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 133 QTSVFTLRTHMRPQWQSE 186
           QT VF L TH    W S+
Sbjct: 171 QTIVFHLETHPNVTWYSQ 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,992
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)