Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d22
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    23   5.5  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    23   7.3  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    23   7.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    22   9.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    22   9.6  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 100 DRYXTQKTTFWCLKTL*LNYCTGXKP 23
           D+  T++  FW L  L    C G  P
Sbjct: 478 DKGYTKQVDFWSLGVLVFEMCCGWSP 503


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 48  SYNVFKHQKVVF*VMYLSXKXKFKYS 125
           S++ +    VVF ++YL+ K   KYS
Sbjct: 381 SHSSYSPYYVVFDILYLNGKSLVKYS 406


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 6   FYDSIYGFXPVQ*FSYNVFKHQKV 77
           + D I G+   Q FS+ VF H +V
Sbjct: 274 YLDHIQGYAEQQAFSHMVFYHPQV 297


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 83  KNDFLVFKNIITELLYWXKTINRIIEE 3
           KND   +KNI+ EL+   +TI  +I++
Sbjct: 616 KNDNESWKNIVMELIKASETIWGLIKD 642


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 185 IIFRXLLXLT*LHXNYLPHVTIFKFTF 105
           I F  L+ +   H N LP +  F +TF
Sbjct: 544 IAFYKLMPIISKHLNELPIIASFDYTF 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,430
Number of Sequences: 5004
Number of extensions: 6034
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)