Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d22
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55946| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_52746| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_46959| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_48802| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_42902| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_29599| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_15925| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_57846| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  

>SB_55946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 12  SKLILLAVYNAYQACIFSILDQHKAFTEGC 41


>SB_52746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 48  SKLILLAVYNAYQACIFSILDQHKAFTEGC 77


>SB_46959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 86  SKLILLAVYNAYQACIFSILDQHKAFTEGC 115


>SB_48802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 12  SKLILLAVYNAYQACIFSILDQHKAFTEGC 41


>SB_42902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 12  SKLILLAVYNAYQACIFSILDQHKAFTEGC 41


>SB_29599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 12  SKLILLAVYNAYQACIFSILDQHKAFTEGC 41


>SB_15925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 12  SKLILLAVYNAYQACIFSILDQHKAFTEGC 41


>SB_57846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   SSMILFMVXNQYSNSVIMFLNTRKSFFEXC 93
           S +IL  V N Y   +   L+  K+F E C
Sbjct: 12  SKLILLAVYNAYQAYIFSILDQHKAFTEGC 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,199
Number of Sequences: 59808
Number of extensions: 34071
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 16,821,457
effective HSP length: 48
effective length of database: 13,950,673
effective search space used: 292964133
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)