Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d22
         (210 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   0.30 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   2.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   2.8  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    20   3.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   3.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   8.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 16  LFMVXNQYSNSVIMFLNTRKSFFEXCIYQXXVNLNIVT*G 135
           LFM+   +SN      N  K +FE  + +   NLN V  G
Sbjct: 33  LFMIGGVFSN------NKSKKYFEQTLNELNFNLNYVNKG 66


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 86  SKNDFLVFKNIITELLYWXK 27
           S  D    KN++ + L+W K
Sbjct: 67  SNMDMYKDKNVVQKFLWWYK 86


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 86  SKNDFLVFKNIITELLYWXK 27
           S  D    KN++ + L+W K
Sbjct: 67  SNMDMYKDKNVVQKFLWWYK 86


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 133 LMSLYLNLXFXDRYXTQKTTF 71
           L+  YL+    D+  T+KT+F
Sbjct: 9   LLKKYLSKDVFDQLKTKKTSF 29


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 133 LMSLYLNLXFXDRYXTQKTTF 71
           L+  YL+    D+  T+KT+F
Sbjct: 25  LLKKYLSKDVFDQLKTKKTSF 45


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 56  IITELLYWXKTINRIIEE 3
           ++  ++YW +T  R +EE
Sbjct: 186 VLDVVMYWKETPVRGVEE 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,615
Number of Sequences: 438
Number of extensions: 430
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)