Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d18
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    47   1e-06
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   8.6  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 23/57 (40%), Positives = 32/57 (56%)
 Frame = +2

Query: 8   KLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAA 178
           K +P C    C  L++P IV++GE L     E  E     CD+ LV+GTS +V+P A
Sbjct: 165 KQVPKCNS--CKGLIKPMIVFYGEGLPMRFFEHMEKDTKVCDMALVIGTSLLVHPFA 219


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 417 KNNM*FYKLFIIFYYPYYNIVKAVELFQKK 506
           KN +  Y+LFII+YY Y  I  +   F  K
Sbjct: 56  KNILLKYELFIIYYYYYLLICLSPHFFPIK 85


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 166  ISCGNVCSASSFEGCN 213
            ++CGN C  SS  GC+
Sbjct: 994  LACGNACYDSSIYGCS 1009


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,990
Number of Sequences: 5004
Number of extensions: 36990
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)