Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d18
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403...    55   3e-08
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703...    42   4e-04
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330     29   2.8  
02_02_0437 - 10238786-10239208                                         27   8.7  

>12_01_0509 -
           4029739-4029890,4031064-4031208,4031665-4031709,
           4031800-4031899,4032013-4032140,4032548-4032712,
           4033033-4033162,4033252-4033412,4034306-4034351,
           4034429-4034494,4034579-4034664,4035811-4035849
          Length = 420

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 30/98 (30%), Positives = 46/98 (46%)
 Frame = +2

Query: 14  LPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQ 193
           +P C +  CG +L+P +V FG+++  +  E+ + A   CD  LVVG++ +   A   A  
Sbjct: 218 IPSCNQ--CGGVLKPDVVMFGDNVPEERAESTKEAARNCDALLVVGSALMTMSAFRLARL 275

Query: 194 AASRGAIVAEFNIEPTPATPDFHFYFEGPCGTTLPQAL 307
           A    A +A   I  T A           CG  LP+ L
Sbjct: 276 AHEANAPIAAITIGETRADSILSLKINARCGEILPRIL 313


>04_03_0112 -
           11369013-11369193,11369194-11369354,11370281-11370383,
           11370467-11370534,11372340-11372393,11374173-11374251,
           11376054-11376133,11376584-11376692,11376813-11376913,
           11378407-11378526,11379613-11379642,11380591-11380689
          Length = 394

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +2

Query: 23  CKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQAAS 202
           C   +CGA L+  ++ + ++L  + ++AA+      D+ L +GTS  + PA      +  
Sbjct: 136 CSDKNCGARLKDTVLDWEDALPPEEMDAAKEQCQKADLVLCLGTSLQITPACNMPLLSLK 195

Query: 203 RGAIVAEFNIEPTP 244
            G  VA  N++ TP
Sbjct: 196 NGGRVAIVNLQATP 209


>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
          Length = 564

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2   PVKLLPHCKKAHCGALLRPHIVWFGESLEHD---ILEAAEHAMSTCDVCLVVGTSSVV 166
           PV+  P+  + +CGA+   H    G S+ HD   + +  EH      V + VGT+ ++
Sbjct: 438 PVEPSPNTNQGNCGAVAHSHP---GGSIIHDRYPVDDIEEHTKCKIQVAIGVGTNFII 492


>02_02_0437 - 10238786-10239208
          Length = 140

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 309 ASACGSVVP-QGPSK*KWKSGVAGVGSILNSATIAPLEAACGANIAAGYTTDDVP 148
           A++  SV+  Q  +  +WKSG+ G GS LNS T       C        T+DD P
Sbjct: 20  ANSTASVLDRQADALLQWKSGLDGHGSCLNSWTKG--TNTCNWTGIVCSTSDDAP 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,192
Number of Sequences: 37544
Number of extensions: 237000
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)