Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d18
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 64 8e-11
SB_18022| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 28 3.8
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 28 5.1
SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08) 28 5.1
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033) 28 5.1
SB_39805| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5) 27 6.7
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 27 6.7
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23) 27 8.9
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088) 27 8.9
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 27 8.9
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 63.7 bits (148), Expect = 8e-11
Identities = 32/96 (33%), Positives = 52/96 (54%)
Frame = +2
Query: 14 LPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQ 193
+P CK CG +L+P +V+FG+S+ I+ A ++ D ++G++ VY + FA +
Sbjct: 327 VPPCKA--CGGILKPEVVFFGDSVPKQIVNIAYDRLAESDALWIIGSTVEVYSSYRFATE 384
Query: 194 AASRGAIVAEFNIEPTPATPDFHFYFEGPCGTTLPQ 301
A+ +G +A NI T A G CGT LP+
Sbjct: 385 ASKQGKPIAILNIGKTRADKLASLKVSGVCGTVLPK 420
>SB_18022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = +2
Query: 146 VGTSSVVYPAAMFAPQAASRGAIVAEFNIEPTPATPDFHFY 268
VGTSSVVYPAA FAP A RG VAEFN+E T T F Y
Sbjct: 1 VGTSSVVYPAAGFAPMLAQRGVPVAEFNMEETSCTGQFSDY 41
>SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 44 ALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAM 181
++++P IV+FGESL + + D+ +V+G+S V P A+
Sbjct: 195 SIMKPDIVFFGESLPSNFYTHLGDDSNKADLLIVIGSSLKVRPVAL 240
>SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 47 LLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAA 178
+++P +V+FGE L + E CD+ LV+GTS V P A
Sbjct: 244 VIKPDVVFFGEDLPKRFY-SFEIDFRKCDLLLVMGTSLEVEPFA 286
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 68 WFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYP 172
WF S +++ A EHA+++C C V ++ + YP
Sbjct: 774 WFASSNTEEVVGAMEHAVTSCFPC--VRSNLIDYP 806
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +2
Query: 92 DILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQAASRGAIVAEFNIEPTPATPDFHFY 268
DI+E +H T LVV T A M A ++A +N+ PT A Y
Sbjct: 86 DIVEWHQHTRRTHKAGLVVKTLRETMRAEMCTQAFAKLYEVLASYNVVPTEAVSSKKLY 144
>SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)
Length = 342
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 209 HPSKLLAEQTLPQDIPLMMYQQLGIHHRWTLHVQLLLKYHVLNFHRTTQCVV 54
HPSKL A T + + Q++ I R ++H LLL + R T ++
Sbjct: 119 HPSKLPATDTCKRLVMASCLQEIRIRRR-SIHTTLLLSDELTKVLRITSLII 169
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 131 DVCLVVGTSSVVYPAAMFAPQAASRGAIVAEFNIEPTPATPDF 259
DV LVV TS+ + P A Q +G + NI P P + F
Sbjct: 2513 DVALVVDTSTSIQPQHWAAIQEFLKGFVEKVNNISPDPDSTRF 2555
>SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)
Length = 431
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = -1
Query: 247 GRCWFYIKFCYNCTPRS----CLRSKHCRRIY 164
G+C+ Y K CY C ++ RSKH +Y
Sbjct: 125 GKCFAYNKTCYKCHKKNHFQVLCRSKHIETVY 156
>SB_39805| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5)
Length = 611
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 261 WKSGVAGVGSILNSATIAPLEAACGANIAAGYTTDDV 151
W+ +A S++N + + A C A + A DDV
Sbjct: 74 WRPSLAAAPSVMNEVSALAVPAVCEAVLCAACIRDDV 110
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -3
Query: 236 VLY*ILLQLHPSKLLAEQTLPQDIPLMMYQQLGIHHRWTLHVQLLLKYHVL 84
+L+ + L LH +LL L + L+++ +L +H R+ LH++LLL +L
Sbjct: 291 LLFHLRLLLH-FRLLLHFRLLLHLRLLLHLRLLLHLRFLLHLRLLLHLRLL 340
>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
Length = 393
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 226 KFCYNCTPRSCLRSKHCRRIYH 161
+FCY+C + + SKHCR H
Sbjct: 225 EFCYHCELVAPIFSKHCRLCNH 246
>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 164 PLMMYQQLGIHHRWTLHVQLLLKYHVLNFHRTTQCVVLARLHNEPFYS 21
P+ +Y L IH R L + L+ H+ + L H+ PFYS
Sbjct: 48 PIALYTSL-IHQRGVLDMMGYLRQEANVQHKPITVMFLMPCHSTPFYS 94
>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
Length = 329
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 247 GRCWFYIKFCYNCTPRSCLRSKHCRR 170
G+C+ Y K C+NC ++ L+ CRR
Sbjct: 105 GKCFVYNKTCHNCHKKNHLQVM-CRR 129
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -1
Query: 304 CLWQCCTTRSFEVKMEIRCGRCWFYIKFCYNCTPRSCLRS 185
C CC+ R +++K E++ RC +C ++C+++
Sbjct: 322 CNLLCCS-RGYKMKKEVQATRCRCKFHWCCKVKCKTCIKN 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,453
Number of Sequences: 59808
Number of extensions: 295945
Number of successful extensions: 603
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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