Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d18
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50177-5|CAE46663.1|  289|Caenorhabditis elegans Hypothetical pr...    41   6e-04
Z50177-4|CAA90546.1|  287|Caenorhabditis elegans Hypothetical pr...    41   6e-04
Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z50177-6|CAA90547.1|  287|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z31590-5|CAA83462.1|  245|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical...    27   7.8  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z50177-5|CAE46663.1|  289|Caenorhabditis elegans Hypothetical
           protein F46G10.7b protein.
          Length = 289

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +2

Query: 14  LPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQ 193
           +P C    CG L++  + +FGE++  D +      ++ CD  L +GTS  V     F   
Sbjct: 195 IPECPS--CGGLMKTDVTFFGENVNMDKVNFCYEKVNECDGILSLGTSLAVLSGFRFIHH 252

Query: 194 AASRGAIVAEFNIEPTPA 247
           A  +   +   NI PT A
Sbjct: 253 ANMKKKPIFIVNIGPTRA 270


>Z50177-4|CAA90546.1|  287|Caenorhabditis elegans Hypothetical
           protein F46G10.7a protein.
          Length = 287

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +2

Query: 14  LPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQ 193
           +P C    CG L++  + +FGE++  D +      ++ CD  L +GTS  V     F   
Sbjct: 193 IPECPS--CGGLMKTDVTFFGENVNMDKVNFCYEKVNECDGILSLGTSLAVLSGFRFIHH 250

Query: 194 AASRGAIVAEFNIEPTPA 247
           A  +   +   NI PT A
Sbjct: 251 ANMKKKPIFIVNIGPTRA 268


>Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical
           protein R11A8.4 protein.
          Length = 607

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 20  HCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQAA 199
           HCK+  C  +++P+IV+FGE L  +  +         D+ +V+G+S  V P A+  P   
Sbjct: 286 HCKR--CEGVIKPNIVFFGEDLGREFHQHVTEDKHKVDLIVVIGSSLKVRPVALI-PHCV 342

Query: 200 SRGAIVAEFNIEPTP 244
            +       N E  P
Sbjct: 343 DKNVPQILINRESLP 357


>Z50177-6|CAA90547.1|  287|Caenorhabditis elegans Hypothetical
           protein F46G10.3 protein.
          Length = 287

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 14  LPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQ 193
           +P C   +CG L++  +  FGE+L  D ++     ++ C+  L +GTS  V         
Sbjct: 193 IPEC--LNCGGLMKTDVTLFGENLNTDKIKVCGKKVNECNGVLTLGTSLEVLSGYQIVNH 250

Query: 194 AASRGAIVAEFNIEPTPA 247
           A  +   +   NI PT A
Sbjct: 251 AHMQNKPIFIVNIGPTRA 268


>Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical
           protein F31D4.7 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/67 (31%), Positives = 25/67 (37%)
 Frame = -2

Query: 333 YFFLKS*SASACGSVVPQGPSK*KWKSGVAGVGSILNSATIAPLEAACGANIAAGYTTDD 154
           YFF  S S    G +VP  P       G   VG  L S  I  L+A   +   AG   + 
Sbjct: 373 YFFFTSLSTVGLGDLVPSSPRLLITMFGFILVGLSLVSMVINLLQAKMKSTYEAGRNDEK 432

Query: 153 VPTTRHT 133
            P    T
Sbjct: 433 TPHIHQT 439


>Z31590-5|CAA83462.1|  245|Caenorhabditis elegans Hypothetical
           protein R01H10.4 protein.
          Length = 245

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 115 CNVHL*CMPSCWYIISGISCGNV 183
           CNV + C P C Y+  G S G V
Sbjct: 103 CNVQVACSPRCDYVAGGNSIGVV 125


>AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical
           protein Y75B8A.12 protein.
          Length = 721

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 112 TCNVHL*CMPSCWYIISGISCGNVCSASSFEGCNCS 219
           T + HL    SC   I+GISCG+V S S  +   C+
Sbjct: 276 TDHAHLFGTFSCDESITGISCGHVSSKSEIDIIICT 311


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 170 PAAMFAPQAASRGAIVAEFNIEPTPATP 253
           PAA   P A         FN E TPATP
Sbjct: 421 PAATATPAATGTPKADTAFNFEETPATP 448


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 170 PAAMFAPQAASRGAIVAEFNIEPTPATP 253
           PAA   P A         FN E TPATP
Sbjct: 371 PAATATPAATGTPKADTAFNFEETPATP 398


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 170 PAAMFAPQAASRGAIVAEFNIEPTPATP 253
           PAA   P A         FN E TPATP
Sbjct: 421 PAATATPAATGTPKADTAFNFEETPATP 448


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 170 PAAMFAPQAASRGAIVAEFNIEPTPATP 253
           PAA   P A         FN E TPATP
Sbjct: 421 PAATATPAATGTPKADTAFNFEETPATP 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,409
Number of Sequences: 27780
Number of extensions: 222174
Number of successful extensions: 545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)