Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d16
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    31   1.1  
SB_6711| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 26/108 (24%), Positives = 53/108 (49%)
 Frame = +1

Query: 262 FAFPHNLVEPQSDVGNKLIENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSR 441
           + +PHN+   +  + +++ E+  +YV T D++ ++D   +P+   ++V       +I SR
Sbjct: 281 YCYPHNV--DREIIPSQISESTPIYV-TKDNQGFLDYSTYPE--RIMVG------DIRSR 329

Query: 442 SPKKTASATIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQH 585
               T    IV+  P   IT++   +  VFS+ + +    CN  +  H
Sbjct: 330 MLHVTLYGAIVHVTP-KEITDVTNEQAHVFSMTVRDETGDCNIFVCDH 376


>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -3

Query: 90  TTIEMQKYIAYINTMIRKIADRKY 19
           TTIE+Q  I Y+NT+I++  +RKY
Sbjct: 391 TTIELQLCIEYVNTVIQEENERKY 414


>SB_6711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 319 ENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRSPKKTASATI 471
           +NL +Y P DDD LYI +      +++ +Y   +D N+    P  + + +I
Sbjct: 65  DNLSIYGPLDDDNLYIYEPL--DEDNLYIYEPPYDDNLSIYEPLDSDNLSI 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,867,949
Number of Sequences: 59808
Number of extensions: 531998
Number of successful extensions: 1278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)