Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d16
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z70034-9|CAA93849.1|  159|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z47357-2|CAD54175.1|  464|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    28   8.9  
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    28   8.9  
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    28   8.9  
L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protei...    28   8.9  
L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeo...    28   8.9  

>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14  MKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQR-DLFYHY 130
           M +FL+A+   I + + + F ISIV  N R+ R  LF+ Y
Sbjct: 119 MVFFLTALQYAIFYSFKVIFMISIVERNARLLRLQLFFQY 158


>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 616 YPETDMQSACSALLKNRNGQSVPPPIKSNLR 708
           Y E  +Q A +A ++  NGQ +PP +   LR
Sbjct: 476 YVENQLQEAVNAAIRANNGQQLPPQLHEQLR 506


>Z70034-9|CAA93849.1|  159|Caenorhabditis elegans Hypothetical
           protein C18E9.9 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 8   LKMKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQRDLFYHYNY 136
           L + +  S  F+II   Y+  FC+   +N      ++FYH+N+
Sbjct: 60  LDLTFTRSGQFVIIELAYSGAFCVCSALNTIYYFCNIFYHFNF 102


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 331 VYVPTDDDRLYIDKKQFPKFNSVLV 405
           VY+PT   R+  DKK FP F  V +
Sbjct: 173 VYIPTLAVRILNDKKNFPNFKGVAI 197


>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 526 VFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETDMQ 636
           +FS+  ++ +  C  M + +++   P EF+Y  TD Q
Sbjct: 133 LFSLFKSDPVMRCFQMTVLNDSTSSPFEFSYLSTDSQ 169


>Z47357-2|CAD54175.1|  464|Caenorhabditis elegans Hypothetical
           protein ZK1128.2b protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 798 WTFSRLKHNKKSLLSHQLFKMRQRNFTSNRSQIAF 694
           WT  R +   K++LS    K  + NF++   Q+AF
Sbjct: 341 WTNQRARKRAKAILSESSIKKAKWNFSNVACQVAF 375


>Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK1128.2a protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 798 WTFSRLKHNKKSLLSHQLFKMRQRNFTSNRSQIAF 694
           WT  R +   K++LS    K  + NF++   Q+AF
Sbjct: 356 WTNQRARKRAKAILSESSIKKAKWNFSNVACQVAF 390


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
           protein F10G7.10c protein.
          Length = 1824

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 768 KSLLSHQLFKMRQRNFTSNRSQIAFYWR 685
           K LL   L+K+     TSNR QI+  WR
Sbjct: 302 KILLDKNLYKVLTEQTTSNRVQISLDWR 329


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
           protein F10G7.10a protein.
          Length = 2025

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 768 KSLLSHQLFKMRQRNFTSNRSQIAFYWR 685
           K LL   L+K+     TSNR QI+  WR
Sbjct: 302 KILLDKNLYKVLTEQTTSNRVQISLDWR 329


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
           protein F10G7.10b protein.
          Length = 1884

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 768 KSLLSHQLFKMRQRNFTSNRSQIAFYWR 685
           K LL   L+K+     TSNR QI+  WR
Sbjct: 302 KILLDKNLYKVLTEQTTSNRVQISLDWR 329


>L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protein
           protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 524 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 625
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 30  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 59


>L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeobox
           protein 23 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 524 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 625
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 32  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,879,641
Number of Sequences: 27780
Number of extensions: 412663
Number of successful extensions: 1220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)