Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d15
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39089| Best HMM Match : RVT_1 (HMM E-Value=2.2e-20)                 30   2.3  
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   30   2.3  
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   3.0  
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   29   5.3  
SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25)                 29   5.3  
SB_23765| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   7.0  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    28   7.0  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   7.0  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.2  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   9.2  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.2  

>SB_39089| Best HMM Match : RVT_1 (HMM E-Value=2.2e-20)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 22  NSFVIKKPINVPNYSCTPAIGRACVCDNKYYKNLGCLIKNAKRKKHLVEH 171
           N  +   P  + NY+ +  I   C+   KY K LG  I +    K+ + H
Sbjct: 206 NFIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLGIYIDSPSSWKYQILH 255


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +3

Query: 183 EAMGSSRQLHGCRRSLFRTGQKPKT---YPF*RNS-QC-ETRY 296
           ++  +S  + GC  SL   GQ PK+   +PF R++ QC E+RY
Sbjct: 54  DSRNNSTAIFGCNMSLLNKGQSPKSRRVHPFARHAGQCAESRY 96


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 244 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 101
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 502 EVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 681
           E I +    ++  NN   +   +  GG    +  +E   S E+  N V WEN    + YI
Sbjct: 101 ETINVTGNYWLPSNNVLELKYLRDIGGVTWTDNCAECCLSKETSQNSVTWENLRSEMYYI 160

Query: 682 GTD 690
           G +
Sbjct: 161 GIE 163


>SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25)
          Length = 439

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 22  NSFVIKKPINVPNYSCTPAIGRACVCDNKYYKNLGCLIKNAKRKKHLVEH 171
           N  +   P  + NY+ +  I   C+   KY K LG  I +    K+ + H
Sbjct: 206 NFIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLGIYIDSHLSWKYQILH 255


>SB_23765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 22  NSFVIKKPINVPNYSCTPAIGRACVCDNKYYKNLGCLIKNAKRKKHLVEH 171
           N  +   P  + NY+ +  I   C+   KY K LG  I +    K+ + H
Sbjct: 206 NFIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLGIYIDSHLSWKYQILH 255


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 407 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 505
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 416 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 502
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 253 KLTLF-KEIRSVKPDTM--KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANL 423
           KL +F K+     PD +  ++++  S ++  RE W   +    PI     + + +   +L
Sbjct: 96  KLQIFVKQKLEGVPDKIMGRVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSL 153

Query: 424 KPTRPNRCYKFLA 462
            PTRPNR  K +A
Sbjct: 154 LPTRPNRTSKPIA 166


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 328 EFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 435
           E  RET  R  E+ FP++   E+    L+  LK T+
Sbjct: 170 ESCRETGKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 693 RVCADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAA 577
           R   D + GF+E L Y    KRLE  G L    H+W ++
Sbjct: 326 RSLTDHSKGFIEKLLYKIPSKRLEVAGAL---THEWLSS 361


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 100 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 210
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/78 (20%), Positives = 41/78 (52%)
 Frame = +1

Query: 133 IKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIV 312
           +K+ K++   ++ E ++ + +L    + A++      K ++L   KE+ +++ +   L  
Sbjct: 436 LKDLKKEHDALQSESKKDKAELAKLDIAAQEGLAAMEKVEELN--KEVIALREENKTLSD 493

Query: 313 NWSGKEFLRETWTRFVED 366
           N++ +  LR+ +   VED
Sbjct: 494 NFNSERILRKKYYNMVED 511


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 100 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 210
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,823,952
Number of Sequences: 59808
Number of extensions: 550018
Number of successful extensions: 1719
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)