Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d15
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.99 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 KYYKNLGCLIKNAKRKKHLVEHEQ 177
           KY  N  C I  A  K H++++++
Sbjct: 70  KYLTNYSCFITCALEKSHIIQNDE 93


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  VIKKPINVPNYSCTPAIGRACVC 99
           V++ P    +  C P I ++C+C
Sbjct: 468 VLRSPPAFSHSRCPPEIHKSCIC 490


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  VIKKPINVPNYSCTPAIGRACVC 99
           V++ P    +  C P I ++C+C
Sbjct: 468 VLRSPPAFSHSRCPPEIHKSCIC 490


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 118 FCNIYCRTRKHAR 80
           +C +YC  +KH +
Sbjct: 212 YCRLYCYAQKHVK 224


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 69  HPRHRACLRV 98
           HPRHR C+ V
Sbjct: 172 HPRHRLCVFV 181


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 94  VCDNKYYKNLGCLIKN 141
           VCDN+ Y +L   +KN
Sbjct: 576 VCDNQTYTSLQMAMKN 591


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +1

Query: 376 IVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIR-----IVEPSYVGM 540
           + N  +   + ++ +L P   N  Y  +A++ L  E  +    V+      IVEP+ V +
Sbjct: 660 VTNMDQYNSILMIEHLSPDH-NGNYSCVARN-LAAEVSHTQRLVVHVPPRWIVEPTDVSV 717

Query: 541 NNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGT 687
                ++L  +  G P   I  +     +S     + E  Y  I+  GT
Sbjct: 718 ERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGT 766


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,566
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)