Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d13
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   213   2e-56
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   213   3e-56
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.68 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.2  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   6.3  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   6.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  213 bits (520), Expect = 2e-56
 Identities = 94/121 (77%), Positives = 109/121 (90%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = +1

Query: 595 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           +SI ++ +++ +YCSVVRV+AHTQ++     QK+
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKK 175



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +2

Query: 689 KKKAHIMEIQLNG 727
           +KKAH+MEIQ+NG
Sbjct: 173 QKKAHLMEIQVNG 185


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  213 bits (519), Expect = 3e-56
 Identities = 93/121 (76%), Positives = 109/121 (90%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = +1

Query: 595 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           +SI ++ +++ +YCSVVRV+AHTQ++     QK+
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKK 175



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +2

Query: 689 KKKAHIMEIQLNG 727
           +KKAH+MEIQ+NG
Sbjct: 173 QKKAHLMEIQVNG 185


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 585 AWTQINRKRFQEDDPLL*CCKSHCPHSNEAVKTATKRRLTLWKS 716
           +W ++ R + Q D  +    +  C H NE VK   K  L  W+S
Sbjct: 449 SWPRLTRNKIQ-DSNIEPVVQEFCDHENEEVKDHAKTLLKEWES 491


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 493 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 356
           P++ +   ++LGNY+  +T+   ++ A  F  E  +C+  +  + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 204 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 40
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 462 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 337
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,088
Number of Sequences: 5004
Number of extensions: 62095
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)