Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d13
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 204 4e-53
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 203 1e-52
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 30 2.2
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 30 2.2
01_05_0125 - 18382402-18382761,18382863-18383036 29 2.8
05_04_0324 - 20273797-20274261 29 3.8
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 8.7
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 204 bits (499), Expect = 4e-53
Identities = 88/121 (72%), Positives = 107/121 (88%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 388 N 390
N
Sbjct: 121 N 121
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/44 (38%), Positives = 31/44 (70%)
Frame = +1
Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKEGSH 705
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +++ +H
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 203 bits (495), Expect = 1e-52
Identities = 87/121 (71%), Positives = 107/121 (88%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 388 N 390
N
Sbjct: 121 N 121
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +1
Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKEGSH 705
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +++ +H
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 19 SSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 159
S+S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 600 NRKRFQEDDPLL*CCKSHCPHSNEAV--KTAT 689
N +RF +DPLL CC H P+ A +TAT
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDRTAT 328
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 403 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 272
R+ S ++ +L PPR ST R+V E C+ + R + +E
Sbjct: 38 RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 121 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 294
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 295 VGYIETPHGLRAL 333
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/63 (20%), Positives = 34/63 (53%)
Frame = -1
Query: 451 MHKVTYSRHINKALIFREESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 272
+ +++ ++ ++++++ E + RSD+++ A +S E VHE S+ ++ PS
Sbjct: 2797 LEELSQTKSVSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGPTPSA 2856
Query: 271 ESR 263
+
Sbjct: 2857 NEK 2859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,967,620
Number of Sequences: 37544
Number of extensions: 420308
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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