Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d13
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         215   3e-56
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               212   3e-55
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  215 bits (525), Expect = 3e-56
 Identities = 93/125 (74%), Positives = 110/125 (88%)
 Frame = +1

Query: 16  LSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 195
           L   MSHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH+
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHI 103

Query: 196 VREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 375
           +RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R
Sbjct: 104 LREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163

Query: 376 RFYKN 390
           RFYKN
Sbjct: 164 RFYKN 168



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 666
           W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 184 WADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  212 bits (517), Expect = 3e-55
 Identities = 91/120 (75%), Positives = 108/120 (90%)
 Frame = +1

Query: 31  SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 210
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60

Query: 211 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 390
           +PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN
Sbjct: 61  KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQK+
Sbjct: 136 WADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKK 176



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 689 KKKAHIMEIQLNG 727
           +KKAHIMEIQ+NG
Sbjct: 174 QKKAHIMEIQVNG 186


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 37  RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 153
           R+F  P+ G +G Y ++  R H GK +   PK +P +  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184


>SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 421 NKALIFREESSFCRSDVDSLQTYAP-PRQSTER 326
           N A+I +    +C  D+   Q YAP  RQ++ R
Sbjct: 392 NDAVILKRRECYCEKDLSKTQLYAPSDRQASNR 424


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  RRHRGKVKAFPKDDPSKPVHL 156
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 268 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 384
           TP  +C+G  GY+ T   L+ L LTV    M E  + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  RRHRGKVKAFPKDDPSKPVHL 156
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,024,613
Number of Sequences: 59808
Number of extensions: 481631
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)