Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d13
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   217   9e-57
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   217   9e-57
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   217   9e-57
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   217   9e-57
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   217   9e-57
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   217   9e-57
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    64   7e-11
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    64   7e-11

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  217 bits (529), Expect = 9e-57
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQK+
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKK 177


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  217 bits (529), Expect = 9e-57
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQK+
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKK 177


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  217 bits (529), Expect = 9e-57
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 669
           WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  217 bits (529), Expect = 9e-57
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQK+
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKK 177


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  217 bits (529), Expect = 9e-57
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 669
           WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  217 bits (529), Expect = 9e-57
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 N 390
           N
Sbjct: 121 N 121



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQK+
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKK 177


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQK+
Sbjct: 39  WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKK 79



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 129
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 574 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKE 696
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQK+
Sbjct: 39  WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKK 79



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 129
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,560
Number of Sequences: 27780
Number of extensions: 356588
Number of successful extensions: 853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)