Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d12
(771 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P55035 Cluster: 26S proteasome non-ATPase regulatory su... 323 3e-87
UniRef50_O17453 Cluster: 26S proteasome non-ATPase regulatory su... 267 2e-70
UniRef50_O61742 Cluster: Proteasome regulatory particle, non-atp... 247 2e-64
UniRef50_P55034 Cluster: 26S proteasome non-ATPase regulatory su... 231 1e-59
UniRef50_A5DWY2 Cluster: 26S proteasome regulatory subunit RPN10... 198 9e-50
UniRef50_Q553E0 Cluster: VWFA domain-containing protein; n=2; Di... 198 2e-49
UniRef50_Q5CQJ0 Cluster: 26S proteasome regulatory subunit 5a wi... 193 5e-48
UniRef50_P38886 Cluster: 26S proteasome regulatory subunit RPN10... 192 8e-48
UniRef50_Q5KP07 Cluster: RPN10-like protein, putative; n=2; Filo... 182 9e-45
UniRef50_Q7XGY3 Cluster: 26S proteasome regulatory subunit S5A, ... 164 2e-39
UniRef50_Q4U9U3 Cluster: Putative uncharacterized protein; n=3; ... 159 9e-38
UniRef50_Q4QIH4 Cluster: Proteasome regulatory non-ATP-ase subun... 154 3e-36
UniRef50_UPI00006CFB2F Cluster: Ubiquitin interaction motif fami... 142 9e-33
UniRef50_UPI0000499B9D Cluster: proteasome regulatory subunit; n... 141 2e-32
UniRef50_A5KAC7 Cluster: 26S proteasome non-ATPase regulatory su... 138 1e-31
UniRef50_Q2UCW0 Cluster: RIB40 genomic DNA, SC012; n=5; Pezizomy... 135 1e-30
UniRef50_A0BVM1 Cluster: Chromosome undetermined scaffold_130, w... 134 2e-30
UniRef50_Q7RH03 Cluster: 26s proteasome regulatory subunit s5a (... 121 2e-26
UniRef50_UPI00005A2BB8 Cluster: PREDICTED: similar to 26S protea... 112 1e-23
UniRef50_A2FK58 Cluster: Putative uncharacterized protein; n=1; ... 84 3e-15
UniRef50_A2EEG1 Cluster: Ubiquitin interaction motif family prot... 83 6e-15
UniRef50_A2EVI3 Cluster: Putative uncharacterized protein; n=1; ... 80 7e-14
UniRef50_A2FWK5 Cluster: 26S proteasome regulatory subunit rpn10... 70 7e-11
UniRef50_A2EQF8 Cluster: 26S proteasome regulatory subunit S5-re... 62 2e-08
UniRef50_Q7QVZ8 Cluster: GLP_239_46442_45663; n=1; Giardia lambl... 47 5e-04
UniRef50_Q8SR64 Cluster: 26S PROTEASOME REGULATORY SUBUNIT S5A; ... 47 6e-04
UniRef50_A2Z593 Cluster: Putative uncharacterized protein; n=3; ... 45 0.002
UniRef50_Q9ZVN9 Cluster: T7A14.8 protein; n=7; Magnoliophyta|Rep... 44 0.003
UniRef50_Q6GR42 Cluster: MGC81060 protein; n=5; Deuterostomia|Re... 44 0.004
UniRef50_Q9VNP8 Cluster: CG11115-PA; n=8; Endopterygota|Rep: CG1... 44 0.004
UniRef50_Q13888 Cluster: TFIIH basal transcription factor comple... 43 0.010
UniRef50_Q01E05 Cluster: Histone mRNA stem-loop binding protein;... 41 0.030
UniRef50_P34567 Cluster: Probable TFIIH basal transcription fact... 40 0.052
UniRef50_Q98L15 Cluster: Mll1222 protein; n=3; Rhizobiales|Rep: ... 39 0.16
UniRef50_Q2BJ22 Cluster: Putative uncharacterized protein; n=1; ... 38 0.21
UniRef50_A3ZT14 Cluster: Putative uncharacterized protein; n=1; ... 38 0.28
UniRef50_UPI0000498DEF Cluster: TFIIH basal transcription factor... 37 0.64
UniRef50_Q4DY61 Cluster: DNA repair and transcription factor pro... 36 0.84
UniRef50_Q5KBR6 Cluster: RNA polymerase II transcription factor,... 36 0.84
UniRef50_Q5BW88 Cluster: SJCHGC09266 protein; n=1; Schistosoma j... 36 1.5
UniRef50_Q73NA4 Cluster: BatB protein, putative; n=1; Treponema ... 35 1.9
UniRef50_Q3ASY8 Cluster: Parallel beta-helix repeat; n=4; cellul... 35 1.9
UniRef50_Q5ZRM5 Cluster: TPR (Repeat) domain protein; n=4; Legio... 35 2.6
UniRef50_Q02A45 Cluster: Von Willebrand factor, type A precursor... 35 2.6
UniRef50_Q3A188 Cluster: Von Willebrand factor type A domain pro... 34 3.4
UniRef50_A7NWY7 Cluster: Chromosome chr5 scaffold_2, whole genom... 34 3.4
UniRef50_Q7RCV3 Cluster: CCAAT-box DNA binding protein subunit B... 34 4.5
UniRef50_Q23A27 Cluster: Putative uncharacterized protein; n=1; ... 34 4.5
UniRef50_A6LJ57 Cluster: D-alanine--D-alanine ligase; n=1; Therm... 33 5.9
UniRef50_Q0U378 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 5.9
UniRef50_A7DPY4 Cluster: von Willebrand factor, type A precursor... 33 5.9
UniRef50_Q97HX3 Cluster: Uncharacterized phage related protein; ... 33 7.9
UniRef50_Q1N498 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_A7CTN6 Cluster: Putative uncharacterized protein precur... 33 7.9
UniRef50_O45444 Cluster: Putative uncharacterized protein clec-6... 33 7.9
>UniRef50_P55035 Cluster: 26S proteasome non-ATPase regulatory
subunit 4; n=3; Diptera|Rep: 26S proteasome non-ATPase
regulatory subunit 4 - Drosophila melanogaster (Fruit
fly)
Length = 396
Score = 323 bits (794), Expect = 3e-87
Identities = 166/237 (70%), Positives = 186/237 (78%), Gaps = 2/237 (0%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-VEV 243
MVLESTMI DNSD+ RNGD+ PTRL Q+D +NLVC +K RSNPENNVGL+TL+N VEV
Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEV 60
Query: 244 LATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTD 423
LATLTSD GRI SK+H VQP G+INLLTGIRIAHL LKHRQGKNHKMRIVVFVGSP+N +
Sbjct: 61 LATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHE 120
Query: 424 EKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGC 603
E +LVK AKRLKKEKVN D+VSFG+ NN +LT F+N LNGKD + GSHLVSVP G
Sbjct: 121 EGDLVKQAKRLKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGT--GSHLVSVPRGS- 177
Query: 604 VVLSEALITS-XXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQE 771
VLS+AL++S FEFGVDPN DPELALALRVSMEEQRQRQE
Sbjct: 178 -VLSDALLSSPIIQGEDGMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQRQRQE 233
>UniRef50_O17453 Cluster: 26S proteasome non-ATPase regulatory
subunit 4; n=7; Schistosoma|Rep: 26S proteasome
non-ATPase regulatory subunit 4 - Schistosoma mansoni
(Blood fluke)
Length = 420
Score = 267 bits (655), Expect = 2e-70
Identities = 135/235 (57%), Positives = 167/235 (71%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVL 246
M E+T+I VDNSDYMRNGDF PTRLQAQ DAV L+C SK + NPEN +GLL+LAN EVL
Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANTEVL 60
Query: 247 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 426
TLT+DV +I ++LH V+P G I + IRIAHLAL+HRQ ++ KMRIV F+GSP+ DE
Sbjct: 61 CTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDE 120
Query: 427 KELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCV 606
KEL +LAKRLKKEKVN D+++FGE+ N L+ F++TLNGKD + GSHL+SV G
Sbjct: 121 KELTRLAKRLKKEKVNVDIINFGENETNEQKLSEFIDTLNGKDGT--GSHLISVAPG--T 176
Query: 607 VLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQE 771
VL + L+TS EFG+D DP+L ALRVSME+QR RQE
Sbjct: 177 VLHDTLMTSPVVAGEDGSGMAGAGLGLEFGLDGAEDPDLLYALRVSMEDQRMRQE 231
>UniRef50_O61742 Cluster: Proteasome regulatory particle,
non-atpase-like protein 10; n=2; Caenorhabditis|Rep:
Proteasome regulatory particle, non-atpase-like protein
10 - Caenorhabditis elegans
Length = 346
Score = 247 bits (605), Expect = 2e-64
Identities = 133/240 (55%), Positives = 172/240 (71%), Gaps = 6/240 (2%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-VEV 243
MV ESTMI VDNS+YMRNGDF PTRLQ+QQDAVNLV K R+NPEN VG+L++AN V+V
Sbjct: 1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQV 60
Query: 244 LATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTD 423
L++L+++ GR+M K H ++P G N + GI+IAHLALKHRQ +NHKMR+V+F+GSP+
Sbjct: 61 LSSLSTEQGRLMMKNHSIEPFGKCNFIAGIKIAHLALKHRQNRNHKMRVVLFIGSPLEEI 120
Query: 424 E-KELVKLAKRLKKEKVNCDVVSFGE-DSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAG 597
E ELVK+AK++KKEKV CDV+ FGE +S+ + +TFV+TLNGK+ S GS L+ VP G
Sbjct: 121 EMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGS--GSSLIVVPQG 178
Query: 598 GCVVLSEALITS---XXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQ 768
L++AL+ S FG+D DP+LALALRVSMEE+R RQ
Sbjct: 179 SS--LTDALLQSSVCKNEDGQAAFGGGGNGMDNAFGMDVENDPDLALALRVSMEEERARQ 236
>UniRef50_P55034 Cluster: 26S proteasome non-ATPase regulatory
subunit 4; n=11; Eukaryota|Rep: 26S proteasome
non-ATPase regulatory subunit 4 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 386
Score = 231 bits (566), Expect = 1e-59
Identities = 126/246 (51%), Positives = 164/246 (66%), Gaps = 11/246 (4%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 240
MVLE+TMI +DNS++MRNGD+ P+RLQAQ +AVNL+C +KT+SNPEN VG+LT+A V
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
VL T TSD+G+I++ +H + G+INL I+IA LALKHRQ KN + RI+VF GSP+
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDS-ENNPL-LTTFVNTLNGKDTSTGGSHLVSVPA 594
++K L + KRLKK V+ D+V+FGED E P L + +N D GSH+V VP+
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNND----GSHIVHVPS 176
Query: 595 GGC----VVLSEALITSXXXXXXXXXXXXXXXXX---FEFGVDPNVDPELALALRVSMEE 753
G V+LS + T F+FGVDPN+DPELALALRVSMEE
Sbjct: 177 GANALSDVLLSTPVFTGDEGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSMEE 236
Query: 754 QRQRQE 771
+R RQE
Sbjct: 237 ERARQE 242
>UniRef50_A5DWY2 Cluster: 26S proteasome regulatory subunit RPN10;
n=12; Ascomycota|Rep: 26S proteasome regulatory subunit
RPN10 - Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 305
Score = 198 bits (484), Expect = 9e-50
Identities = 111/248 (44%), Positives = 152/248 (61%), Gaps = 13/248 (5%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTL--ANVE 240
MVLE+TMI +DNS+YMRNGD+L +R AQ + +K SNPEN VG+L A +
Sbjct: 1 MVLEATMIAIDNSEYMRNGDYLTSRYDAQLTTTEFIFQNKVNSNPENTVGVLAYGGAGPQ 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
VL+TLT+D G+I+S +H + GD N GI++A LALKHRQ K + RI++FVGSP+
Sbjct: 61 VLSTLTTDFGKILSGVHETKIEGDNNFSDGIQVAALALKHRQNKVQQQRIIIFVGSPIKE 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGG 600
EKEL KLAK++KK V D+++FGE+S N L F + +N +D SHLV+VP G
Sbjct: 121 LEKELEKLAKKMKKNNVAIDIINFGEESINTSKLEKFHSVINNQD----NSHLVTVPPGP 176
Query: 601 CVVLSEALITSXXXXXXXXXXXXXXXXXFEFG-----------VDPNVDPELALALRVSM 747
+L E + +S FG +DPN+DP+LALALR+S+
Sbjct: 177 -RLLYEVIASSPILVEDGAFGGGAGGEMDFFGGAGGVADAGDIIDPNMDPDLALALRLSL 235
Query: 748 EEQRQRQE 771
EE++ RQE
Sbjct: 236 EEEKARQE 243
>UniRef50_Q553E0 Cluster: VWFA domain-containing protein; n=2;
Dictyostelium discoideum|Rep: VWFA domain-containing
protein - Dictyostelium discoideum AX4
Length = 349
Score = 198 bits (482), Expect = 2e-49
Identities = 104/237 (43%), Positives = 160/237 (67%), Gaps = 2/237 (0%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANV--E 240
M LE+T++ +DNS++MRNGDF P+R +AQ+DAVNL+C SKT+SNPE+ V ++++A E
Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPE 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
VL TLT ++ +I+S ++ NG I+ T ++IA LAL+HRQ + RI+ FVGSP+
Sbjct: 61 VLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKE 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGG 600
++EL++LAKRLKK V D+++FGE +EN+ L F+N +N D SHL++VP G
Sbjct: 121 TKEELIQLAKRLKKNGVAVDIINFGEVTENSDKLEAFINDVNNNDE----SHLLTVPPGP 176
Query: 601 CVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQE 771
+LS+ ++ S EF ++ + DP+LA+AL++S+EE++QRQE
Sbjct: 177 -HILSDIILQSPIVESGSGQFGS------EF-INADTDPDLAMALKLSLEEEKQRQE 225
>UniRef50_Q5CQJ0 Cluster: 26S proteasome regulatory subunit 5a with
a vWA domain and two ubiquitin interacting motifs; n=2;
Cryptosporidium|Rep: 26S proteasome regulatory subunit
5a with a vWA domain and two ubiquitin interacting
motifs - Cryptosporidium parvum Iowa II
Length = 383
Score = 193 bits (470), Expect = 5e-48
Identities = 110/243 (45%), Positives = 145/243 (59%), Gaps = 9/243 (3%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVE 240
M LE+T+I +DNS+Y RNGD+ +R+ QQDA N + KT+ NPEN VG+L++A +E
Sbjct: 1 MTLEATVICLDNSNYSRNGDYGTSRMLQQQDATNFISGIKTQQNPENLVGILSMAGERIE 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
+ T TSD+ + M + ++ NG I+LL GI+IA LALKHR KN + RIV FVGSP+
Sbjct: 61 LRVTPTSDLSKTMHAMDGIRLNGKIDLLRGIQIAQLALKHRLNKNLRQRIVCFVGSPLED 120
Query: 421 D--EKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTS-----TGGSHL 579
D EK+L KL K LKK V+ D++SFGE N L VN N +TS ++L
Sbjct: 121 DLTEKQLEKLGKVLKKNNVSIDIISFGEILVNRERLQALVNAANNDNTSNFVEVAAPTNL 180
Query: 580 VSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQR 759
+VL E TS FEFG+DPN DPEL +ALR+SMEE+R
Sbjct: 181 TDALMASPIVLGEG--TSSGVYADGLAGAAGETSGFEFGIDPNADPELYMALRMSMEEER 238
Query: 760 QRQ 768
RQ
Sbjct: 239 NRQ 241
>UniRef50_P38886 Cluster: 26S proteasome regulatory subunit RPN10;
n=12; Dikarya|Rep: 26S proteasome regulatory subunit
RPN10 - Saccharomyces cerevisiae (Baker's yeast)
Length = 268
Score = 192 bits (468), Expect = 8e-48
Identities = 107/246 (43%), Positives = 152/246 (61%), Gaps = 11/246 (4%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVE 240
MVLE+T++ +DNS+Y RNGDF TR +AQ D+V + +K SNPEN VGL++ A N
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
VL+T T++ G+I++ LH Q G +++ T ++IA L LKHRQ K RIV FV SP++
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGG 600
EL++LAK LKK V D+++FGE +N LL F+ +N T SHL++V G
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEET--SHLLTVTPGP 178
Query: 601 CV----VLSEALI----TSXXXXXXXXXXXXXXXXXF-EFGVDPNVDPELALALRVSMEE 753
+ + S +I +S F +FGVDP++DPELA+ALR+SMEE
Sbjct: 179 RLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEE 238
Query: 754 QRQRQE 771
++QRQE
Sbjct: 239 EQQRQE 244
>UniRef50_Q5KP07 Cluster: RPN10-like protein, putative; n=2;
Filobasidiella neoformans|Rep: RPN10-like protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 371
Score = 182 bits (443), Expect = 9e-45
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 3/237 (1%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVE 240
M LES M+ +DNS+YMRNGD+ PTR QAQ +AV V +KT +NPE+ VG++T+A +
Sbjct: 1 MPLESCMLILDNSEYMRNGDYPPTRFQAQAEAVQTVFTAKTDANPESAVGMMTMAGNSPS 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
+L T T+D+GR+M L +V + L T I IA LALKHR+ KN + RIV+FVGSP+
Sbjct: 61 LLVTPTNDLGRLMHALSKVLVSNTAQLSTAISIAQLALKHRENKNQRQRIVIFVGSPLGE 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTG-GSHLVSVPAG 597
+ LVKL KRL+K V DVV+FG++ +N L G + G S+LVSVP+G
Sbjct: 121 SAESLVKLGKRLRKNNVFVDVVTFGDEGRDND------EKLRGLVEAVGEESNLVSVPSG 174
Query: 598 GCVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQ 768
LS+ + +S FE +DPN+DPELA+A+R+S++E + +Q
Sbjct: 175 E-RFLSDVIASS--PILFDGENPMAAAGGFEGDIDPNMDPELAMAIRMSLQEAQAQQ 228
>UniRef50_Q7XGY3 Cluster: 26S proteasome regulatory subunit S5A,
putative; n=6; Oryza sativa|Rep: 26S proteasome
regulatory subunit S5A, putative - Oryza sativa subsp.
japonica (Rice)
Length = 550
Score = 164 bits (399), Expect = 2e-39
Identities = 102/230 (44%), Positives = 135/230 (58%), Gaps = 6/230 (2%)
Frame = +1
Query: 73 LESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 246
LE+T+I VD+S++MRNGD+ PTRLQAQ+DA NLV +K SNPEN VG+L +A V VL
Sbjct: 5 LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64
Query: 247 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 426
TSD + ++ +H ++ +G+ NL + IA L LK+R K RIVVFVGSPV DE
Sbjct: 65 LAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVK-DE 123
Query: 427 KELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG-SHLVSVPAG-- 597
K L + K+LKK V+ DVV FGE + P L + GG SH+V +P G
Sbjct: 124 K-LETIGKKLKKYNVSLDVVEFGESDDEKP------EKLEALVAAVGGSSHIVHIPPGED 176
Query: 598 -GCVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVS 744
V+ + +IT +E+ VDPNVDPE A ALR+S
Sbjct: 177 LRAVLANTPIITG----DEGGGAAAGGASRYEYNVDPNVDPEFAEALRLS 222
>UniRef50_Q4U9U3 Cluster: Putative uncharacterized protein; n=3;
Piroplasmida|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 332
Score = 159 bits (385), Expect = 9e-38
Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 5/238 (2%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANV--E 240
M +E+ +I +DNS+Y RNGDF+PTRL AQ DA+ L+ +K EN+VG++ LA +
Sbjct: 1 MTIEAALICIDNSEYSRNGDFVPTRLGAQIDAIGLIASAKLSEQFENSVGIVCLARKGSQ 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
+L ++D+G ++ L V P+ + + GI+ A LALKHR K+ + RI+ FV SP+
Sbjct: 61 LLTAPSNDLGTFLTDLQTVVPHSQSDFIRGIQTAQLALKHRLNKSQQQRIICFVASPIVE 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGG 600
K VKL K LKK V D++ +SE L T + +N DTS +L P G
Sbjct: 121 PVKHFVKLGKLLKKNNVILDIIDISNNSETEEKLKTLHSAVNNNDTS---HYLCCKPCSG 177
Query: 601 CVVLSEALITS---XXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQR 765
+LS+ + S +FGVDP +DP+L +ALR+S+E++ +R
Sbjct: 178 -TLLSDMIFNSAVLYGQSGGVGGGSQISQNLTDFGVDPEMDPQLYMALRLSLEQEEER 234
>UniRef50_Q4QIH4 Cluster: Proteasome regulatory non-ATP-ase subunit,
putative; n=7; Trypanosomatidae|Rep: Proteasome
regulatory non-ATP-ase subunit, putative - Leishmania
major
Length = 346
Score = 154 bits (373), Expect = 3e-36
Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 6/239 (2%)
Frame = +1
Query: 70 VLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEV 243
++E+ + +D+++YMRNGD PTR+ A+QDA L+ ++K ++N EN +G LT V
Sbjct: 1 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV 60
Query: 244 LATLTSDVGRIMSKLHRVQPNGD-INLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
TLT++V IM+ + + NG N +G++IA LAL HR + RIV FVGSP+
Sbjct: 61 YETLTNNVDAIMTSIGSIPVNGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGG 600
EL LAK+L+K+ V DVV+FG +S N LL FV ++ K+ S ++V A
Sbjct: 121 TAAELEALAKKLRKDDVAVDVVAFGVES-NVELLQAFVKKVSKKE----NSRFLAVAARE 175
Query: 601 CV---VLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQ 768
+ ++S A++ FGVDPN+DPELA+ALR+SME++ QRQ
Sbjct: 176 NLTDKLMSNAILLGEDLPEGAEGGGASMSG---FGVDPNMDPELAMALRLSMEDEMQRQ 231
>UniRef50_UPI00006CFB2F Cluster: Ubiquitin interaction motif family
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ubiquitin interaction motif family protein - Tetrahymena
thermophila SB210
Length = 392
Score = 142 bits (344), Expect = 9e-33
Identities = 88/252 (34%), Positives = 142/252 (56%), Gaps = 17/252 (6%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 240
M LE++++ +DN++Y RNGD LP+R +AQ + + + ++K + N EN VG+LT+ VE
Sbjct: 1 MTLEASIVILDNTEYARNGDHLPSRYEAQAETIQAIINAKQQMNMENAVGILTMGGPQVE 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGD-INLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVN 417
VL T ++D I+ L V+ G+ + L ++IA L LKHR+ KN + RI+VFV SP+
Sbjct: 61 VLITPSADPDAILGCLFGVKLRGEKAHFLNALQIAQLGLKHRKNKNMRQRIIVFVASPIV 120
Query: 418 TDEKELVKLAKRLKKEKVNCDVVSFGEDSENN-PLLTTFVNTLNGKDTS-----TGGSHL 579
DEK L ++AK+LKK V+ D+V+ + N L F+ T+N D+S G
Sbjct: 121 EDEKTLERVAKQLKKNNVSVDIVNLCQSGVNQIEKLDKFIQTVNSGDSSYFLNVQSGITS 180
Query: 580 VSVPAGGCVVLSEAL-------ITSXXXXXXXXXXXXXXXXXFEF-GVDPNVDPELALAL 735
++ +L+ L +S E+ G+DP+ DPELA A+
Sbjct: 181 LTETLFNSPILNRFLSGSNANQASSVGNVPINPTQAGGANPFAEYGGIDPSEDPELAQAM 240
Query: 736 RVSMEEQRQRQE 771
++S+EE+++ QE
Sbjct: 241 KLSLEEEKRIQE 252
>UniRef50_UPI0000499B9D Cluster: proteasome regulatory subunit; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: proteasome
regulatory subunit - Entamoeba histolytica HM-1:IMSS
Length = 302
Score = 141 bits (341), Expect = 2e-32
Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 2/226 (0%)
Frame = +1
Query: 76 ESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVE--VLA 249
E+T+I +D SDYMRNGD+ P+R++AQ +AV + + R NPEN+VG + + +L
Sbjct: 3 EATIIIIDTSDYMRNGDYTPSRMEAQIEAVQAITSGRLRKNPENHVGFIAAGSESKRILV 62
Query: 250 TLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEK 429
TLT D G+I+S LH + G + + +A LAL +R K + RI++FVGSP+N +
Sbjct: 63 TLTGDFGKILSGLHEAKIGGSSDFKQALLVAKLALANRVDKIYTQRIILFVGSPLNINSD 122
Query: 430 ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCVV 609
E + LKK + D+VSFGE +N P++ F + + G D + LV+VPAG ++
Sbjct: 123 EAQTMVNLLKKSNIALDIVSFGEVVDNAPVIELFPSQM-GDDCT-----LVTVPAGPHIL 176
Query: 610 LSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSM 747
L T+ DP DPE A A+R SM
Sbjct: 177 LDMISKTNIIMRDGGLNT-----------FDPEFDPEYAAAIRASM 211
>UniRef50_A5KAC7 Cluster: 26S proteasome non-ATPase regulatory
subunit 4, putative; n=4; Plasmodium|Rep: 26S proteasome
non-ATPase regulatory subunit 4, putative - Plasmodium
vivax
Length = 482
Score = 138 bits (335), Expect = 1e-31
Identities = 62/160 (38%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Frame = +1
Query: 73 LESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEVL 246
+E+T+I VDNSDY RN D +P R +Q D VN++C +KT + +NN+G++ +A +V
Sbjct: 4 IEATIICVDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIVMMAGDKTKVK 63
Query: 247 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 426
+LT+D+G+++S +H ++ +G +++ + IA LALKHR KN +I++FVGSP+ +E
Sbjct: 64 VSLTNDIGQLLSCIHEIKLDGTCDIVRSLLIAQLALKHRVDKNLGQKIMLFVGSPLKVNE 123
Query: 427 KELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 546
K+L+ K+LKK + D++S+G+ +N +L +++N
Sbjct: 124 KQLISTGKQLKKNNICLDIISYGDIHKNRDILMKLYDSVN 163
>UniRef50_Q2UCW0 Cluster: RIB40 genomic DNA, SC012; n=5;
Pezizomycotina|Rep: RIB40 genomic DNA, SC012 -
Aspergillus oryzae
Length = 240
Score = 135 bits (326), Expect = 1e-30
Identities = 80/200 (40%), Positives = 118/200 (59%), Gaps = 6/200 (3%)
Frame = +1
Query: 190 RSNPENNVGLLTLANV--EVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHR 363
R +P++ VGL+++ EVL+T TSD G I++ LHR + +G +L + I++A LALKHR
Sbjct: 2 RVHPQSAVGLMSMGGKGPEVLSTFTSDFGAILAGLHRTKIHGTAHLSSSIQVAGLALKHR 61
Query: 364 QGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGE-DSENNPLLTTFVNT 540
K+ + RI+VF SP+ DEK LVKLAK++KK V+ DV++FG+ +S+ L FV
Sbjct: 62 SEKSQRQRIIVFSCSPIEEDEKSLVKLAKKMKKINVSIDVIAFGDLESDQTKKLEAFVEN 121
Query: 541 LNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXXF-EFGVDPNV-- 711
+ G D GSHL +P G ++ E +T +FG +
Sbjct: 122 VKGGD----GSHLAIIPPGPNLLSEELQMTPILGGDGAGAGDAGAGGETGDFGFEDAAEN 177
Query: 712 DPELALALRVSMEEQRQRQE 771
DPELA ALR+S+EE++ RQE
Sbjct: 178 DPELAFALRLSLEEEKNRQE 197
>UniRef50_A0BVM1 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 365
Score = 134 bits (325), Expect = 2e-30
Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 240
M LE+ ++ +DNS++ RNGD P+R AQQ+A+ L + SN E+ +GL+ V
Sbjct: 1 MPLEAAVVVLDNSEFSRNGDLEPSRWNAQQEAIELYINVVIDSNMESGMGLILGGGKQVR 60
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
+L T T+D I + H+ + G++ I+ A LALKHR K RIV FV SP+
Sbjct: 61 LLMTPTNDRDLIQGQFHKTRLEGNLKFSVAIQQAQLALKHRINKQQHQRIVAFVASPIEE 120
Query: 421 DEKELVKLAKRLKKEKVNCDVVSFGEDSENN-PLLTTFVNTLNGKDTSTGGSHLVSVPAG 597
+ LV LAKRLKK + D+++FGE +E++ L TF + + +S + L + A
Sbjct: 121 EVDTLVNLAKRLKKNNIAIDLINFGEQNEDHLKKLKTFFDNVQKGQSSKYINILPGMSAT 180
Query: 598 GCVVLSEALITSXXXXXXXXXXXXXXXXXFEF----GVDPNVDPELALALRVSMEEQRQR 765
+ S + +F G+DPN+DPELA+ +++S+EE+ QR
Sbjct: 181 ETLFSSLGNNSDFQAEPGQEQQAPQQRTGGQFSEYGGIDPNLDPELAMIMKMSLEEEAQR 240
>UniRef50_Q7RH03 Cluster: 26s proteasome regulatory subunit s5a
(Multiubiquitin chain binding protein). [mouse-ear
cress-related; n=3; Plasmodium (Vinckeia)|Rep: 26s
proteasome regulatory subunit s5a (Multiubiquitin chain
binding protein). [mouse-ear cress-related - Plasmodium
yoelii yoelii
Length = 461
Score = 121 bits (292), Expect = 2e-26
Identities = 58/179 (32%), Positives = 108/179 (60%), Gaps = 21/179 (11%)
Frame = +1
Query: 73 LESTMIXVDNSDYMRNGDFLPTRLQAQQ-------------------DAVNLVCHSKTRS 195
+E+T+I +DNSDY N D +P R +Q D VN++C +KT
Sbjct: 4 IEATIICIDNSDYNMNEDIVPNRFMSQVATPFDNMFMQAHAVFFHLIDCVNILCCNKTSM 63
Query: 196 NPENNVGLLTLAN--VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQG 369
+ +N++G+L +A +++ +LT+D+G+++S +H ++ G +++ + IA LALKHR
Sbjct: 64 HYKNSIGVLVMAGDGIKIKVSLTNDIGQLLSCIHGIKIEGSCDIIRSLLIAQLALKHRID 123
Query: 370 KNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 546
KN + +I++F+GSP+ +EK+L+ K+LKK ++ D++S+G ++N L ++N
Sbjct: 124 KNLEQKIIIFIGSPIEANEKQLISTGKQLKKNNISIDIISYGNVNKNREKLNKLFESIN 182
>UniRef50_UPI00005A2BB8 Cluster: PREDICTED: similar to 26S
proteasome non-ATPase regulatory subunit 4 (26S
proteasome regulatory subunit S5A) (Rpn10)
(Multiubiquitin chain binding protein) (Antisecretory
factor-1) (AF) (ASF); n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to 26S proteasome non-ATPase
regulatory subunit 4 (26S proteasome regulatory subunit
S5A) (Rpn10) (Multiubiquitin chain binding protein)
(Antisecretory factor-1) (AF) (ASF) - Canis familiaris
Length = 205
Score = 112 bits (269), Expect = 1e-23
Identities = 63/120 (52%), Positives = 76/120 (63%)
Frame = +1
Query: 382 MRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTS 561
MRI VGSPV +EK+LVKLAKR KKEKV D++S G++ N LT FVNTL G D +
Sbjct: 1 MRIFALVGSPVEDNEKDLVKLAKRFKKEKVYVDIISLGKEEVNTEKLTAFVNTLKGNDGT 60
Query: 562 TGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRV 741
GS LV+VP G L++ALI+S FEFGVDP+ DP+LALALRV
Sbjct: 61 --GSPLVAVPPGPS--LADALISSPVLGWQGGAMLGLGASGFEFGVDPSADPQLALALRV 116
>UniRef50_A2FK58 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 242
Score = 84.2 bits (199), Expect = 3e-15
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 2/222 (0%)
Frame = +1
Query: 79 STMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVE--VLAT 252
S ++ +DNS NGDF PTR++AQ+ AVN + N + V + T + E + +
Sbjct: 7 SIVMIIDNSSTSINGDFFPTRIEAQRKAVNQLATYIFSLNSNSQVAVYTAGSKEFGIRVS 66
Query: 253 LTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKE 432
L S +I+ + ++ G++ L T I+ A +A + K K I+ FVG P + +E
Sbjct: 67 LVSSSSKILPVISQISCGGNLRLETSIKQALIAFHFIEHKCSK-SILCFVGGPNDINENN 125
Query: 433 LVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCVVL 612
+A++ KKE + +++FG + N PLL +++ K + + +G +V+
Sbjct: 126 SQIIAQKCKKESADLHILTFGNNVPNVPLLEKLAKSVSPKSIFIN----LPIDSGDPLVI 181
Query: 613 SEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALR 738
S+A++ S VDP + EL LAL+
Sbjct: 182 SDAILKSDLGPGEKNARLELKAIS---NVDPALTQELMLALQ 220
>UniRef50_A2EEG1 Cluster: Ubiquitin interaction motif family
protein; n=1; Trichomonas vaginalis G3|Rep: Ubiquitin
interaction motif family protein - Trichomonas vaginalis
G3
Length = 406
Score = 83.4 bits (197), Expect = 6e-15
Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Frame = +1
Query: 76 ESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVLA 249
++ ++ +DNS NGDF P RL AQ A + + S +++ +N + T+ N +
Sbjct: 6 QAVVMMIDNSITSINGDFYPNRLAAQTLAADRLLASYHKNSAKNQFAVATIGSGNFGIQL 65
Query: 250 TLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEK 429
+L D+ ++ L + G+I IR LAL+HR + RIV+FVGS + ++
Sbjct: 66 SLCKDMIKVSHALDAITIGGEIRFENAIRCGFLALRHRDQEVSIKRIVIFVGSHHDFTQE 125
Query: 430 ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTL 543
+ L + KE V D+++FG+D + +L +++ L
Sbjct: 126 RIEALVRDTNKEAVGVDIIAFGDDVNSPEILESYIKQL 163
>UniRef50_A2EVI3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 253
Score = 79.8 bits (188), Expect = 7e-14
Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Frame = +1
Query: 88 IXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVE--VLATLTS 261
+ +DN+D +GDF P RL AQ+ V+ + SNP++ +G++T+ + E + +LTS
Sbjct: 10 VLIDNTDISIDGDFYPNRLDAQKTTVDRLSQFYFSSNPKSQIGIVTMGSKEFGLRTSLTS 69
Query: 262 DVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELV- 438
I+ L ++P G + L ++ + LK+ + R++ F+G ++KE
Sbjct: 70 SHTTILKTLQNIKPGGSLYFLKALKTIMIMLKYCNTDVEEKRVLAFIGGDHGINDKEKAN 129
Query: 439 KLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKD 555
++A +E + D+V G+ N PL+ + G +
Sbjct: 130 EIATTFTREDIPLDIVIIGKRVPNVPLIKNMCRQIPGSN 168
>UniRef50_A2FWK5 Cluster: 26S proteasome regulatory subunit
rpn10-related protein; n=1; Trichomonas vaginalis
G3|Rep: 26S proteasome regulatory subunit rpn10-related
protein - Trichomonas vaginalis G3
Length = 231
Score = 69.7 bits (163), Expect = 7e-11
Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Frame = +1
Query: 76 ESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEVLA 249
E+ + +DNSD NGDF P+RL AQ+ A + + +P+ + + ++ + +
Sbjct: 7 EAIIFLIDNSDTSINGDFDPSRLDAQKLACERLASYNLKQSPQTEIAIGSIGSECFGIQQ 66
Query: 250 TLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEK 429
+L + ++ ++ P G+ + G+ A LALK+ RIV+F+GS N
Sbjct: 67 SLLNTTSKLHKTFDKIYPGGEALVTKGLLCAMLALKYASRFITSKRIVLFLGSKNNLTND 126
Query: 430 ELVKLAKRLKKEKVNCDVVSFGED 501
+ + ++ E ++ D+++FG +
Sbjct: 127 DAKSIIEKANDENISIDIIAFGTE 150
>UniRef50_A2EQF8 Cluster: 26S proteasome regulatory subunit
S5-related protein; n=1; Trichomonas vaginalis G3|Rep:
26S proteasome regulatory subunit S5-related protein -
Trichomonas vaginalis G3
Length = 255
Score = 61.7 bits (143), Expect = 2e-08
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Frame = +1
Query: 79 STMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVE--VLAT 252
+T+I +DNS NGDF+ RL AQ + + +SN + VG++T++ E + ++
Sbjct: 7 ATIILIDNSPTSINGDFITDRLNAQTTCAERLAKNYNQSNQNSQVGIITMSRPEFGIRSS 66
Query: 253 LTSDVGRIMSKLHRVQPNGD-INLLTGIRIAHLALKHRQGKNHKMRIVVFVGSP-VNTDE 426
T+ I + + ++ + I++L G++ A LALK+ + RI++FV S + TDE
Sbjct: 67 PTTKPNNIANSIPNIKRGKEPIDILLGVKSAILALKNCIPIPSEKRILIFVSSDCLMTDE 126
Query: 427 KELVKLAKRLKKEKVNCDVVSFGE 498
A + K V D+V GE
Sbjct: 127 IAATIRALSI-KNNVIIDIVVMGE 149
>UniRef50_Q7QVZ8 Cluster: GLP_239_46442_45663; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_239_46442_45663 - Giardia lamblia
ATCC 50803
Length = 259
Score = 47.2 bits (107), Expect = 5e-04
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Frame = +1
Query: 286 LHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSP--VNTDEKELVKLAKRLK 459
L+ ++P+ LT I+IA L+L+HR + IV FV SP ++ D++++ L + L
Sbjct: 30 LYPIEPSA---FLTAIQIALLSLRHRPTQTMASSIVAFVYSPLELSVDKEDMTNLGRELS 86
Query: 460 KEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVS 585
E ++ + FGE ++ N L ++ D S GS+ ++
Sbjct: 87 SEAIDITLYVFGEHAQANAQLLQYL-----VDASAAGSNRIN 123
>UniRef50_Q8SR64 Cluster: 26S PROTEASOME REGULATORY SUBUNIT S5A;
n=1; Encephalitozoon cuniculi|Rep: 26S PROTEASOME
REGULATORY SUBUNIT S5A - Encephalitozoon cuniculi
Length = 208
Score = 46.8 bits (106), Expect = 6e-04
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Frame = +1
Query: 76 ESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEV--LA 249
E+ ++ +DN +N D+LP+R AQ++A+ + K + E+ +G++ L + +
Sbjct: 3 ETIVVLLDNGMASQNQDYLPSRFMAQKEAIESLISKKFEDSQESTIGIIPLVQAQSNDII 62
Query: 250 TLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEK 429
T T I + L+ ++ + +++ + + R +VVF+GS EK
Sbjct: 63 TPTKQRPYIKTFLNGIRLHRGADIMRCLSQSLHIFNQRDSPG--CTLVVFLGSEAQESEK 120
Query: 430 -ELVKLAKRLKKEKVNCDVVSFGEDSE 507
EL +L V +V FGE +E
Sbjct: 121 DELFARIYQLLTLGVAIKMVFFGEAAE 147
>UniRef50_A2Z593 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 198
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Frame = +1
Query: 61 TKMV--LESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSK 186
TKM +++TMI VD+S +M D+ PTRLQAQ DA NLV +K
Sbjct: 71 TKMARSMQATMICVDDSVWMLKEDYPPTRLQAQADAANLVFATK 114
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1
Query: 73 LESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSK 186
+++TMI VD+S +M D+ PTRLQAQ DA NLV +K
Sbjct: 35 MQATMICVDDSVWMLKEDYPPTRLQAQADAANLVFATK 72
>UniRef50_Q9ZVN9 Cluster: T7A14.8 protein; n=7; Magnoliophyta|Rep:
T7A14.8 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 421
Score = 44.4 bits (100), Expect = 0.003
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Frame = +1
Query: 64 KMVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEV 243
K ++ I +D S DF P+R+ V NP + +GL+++ N V
Sbjct: 78 KGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKN-GV 136
Query: 244 LATLTSDVG-----RIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGS 408
TLT D+G I + + +++ GD +L + + H L H+ +++ +
Sbjct: 137 AHTLT-DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHR-EVLILYSA 194
Query: 409 PVNTDEKELVKLAKRLKKEKVNCDVVSFGED 501
D ++++ ++ KK K+ C V+ +
Sbjct: 195 LCTCDPGDIMETIQKCKKSKLRCSVIGLSAE 225
>UniRef50_Q6GR42 Cluster: MGC81060 protein; n=5; Deuterostomia|Rep:
MGC81060 protein - Xenopus laevis (African clawed frog)
Length = 395
Score = 44.0 bits (99), Expect = 0.004
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
Frame = +1
Query: 88 IXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEVLATLTS 261
+ VD+S M + D P RL + NP + +GL+ N E L L
Sbjct: 63 VIVDSSRTMEDQDLKPNRLTCTLKLLEFFVEEYFDQNPISQIGLIVTRNKRAEKLTELAG 122
Query: 262 DVGR---IMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKE 432
+ + M K + +G+ +L + +A LKH G + +V+F S D
Sbjct: 123 NPRQHINAMKKAVDMTCSGEPSLYNSLNLALQTLKHMPGHTSREILVIF-SSLTTCDPTN 181
Query: 433 LVKLAKRLKKEKVNCDVVSFGEDSENNPLLT 525
+ + K LK KV V+ + +LT
Sbjct: 182 IYDMIKCLKASKVRVSVIGLSAEVRVCTVLT 212
>UniRef50_Q9VNP8 Cluster: CG11115-PA; n=8; Endopterygota|Rep:
CG11115-PA - Drosophila melanogaster (Fruit fly)
Length = 438
Score = 44.0 bits (99), Expect = 0.004
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 6/155 (3%)
Frame = +1
Query: 55 KNTKMVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA- 231
+N ++ + +D S+ M D PTRL+ + L NP + +GL+ L
Sbjct: 55 QNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALKA 114
Query: 232 -NVEVLATLTSDVG---RIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMR-IVV 396
E + LT + + L V + +L G+ +A +LK +H R IV+
Sbjct: 115 KRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLK--VVPSHASREIVI 172
Query: 397 FVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGED 501
+GS D ++ LKKE + C V+S +
Sbjct: 173 IMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAE 207
>UniRef50_Q13888 Cluster: TFIIH basal transcription factor complex
p44 subunit; n=54; Eumetazoa|Rep: TFIIH basal
transcription factor complex p44 subunit - Homo sapiens
(Human)
Length = 395
Score = 42.7 bits (96), Expect = 0.010
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Frame = +1
Query: 88 IXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEVLATLTS 261
+ VD S M + D P RL + NP + +G++ + E L L+
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 262 DVGRIMSKLHR---VQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKE 432
+ + ++ L + + +G+ +L + IA LKH G + +++F S D
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIF-SSLTTCDPSN 181
Query: 433 LVKLAKRLKKEKVNCDVVSFGED 501
+ L K LK K+ V+ +
Sbjct: 182 IYDLIKTLKAAKIRVSVIGLSAE 204
>UniRef50_Q01E05 Cluster: Histone mRNA stem-loop binding protein;
n=1; Ostreococcus tauri|Rep: Histone mRNA stem-loop
binding protein - Ostreococcus tauri
Length = 341
Score = 41.1 bits (92), Expect = 0.030
Identities = 15/30 (50%), Positives = 26/30 (86%)
Frame = +1
Query: 67 MVLESTMIXVDNSDYMRNGDFLPTRLQAQQ 156
MVLE+T++ +DNS+++RN D+ P+RLQ ++
Sbjct: 306 MVLEATILCLDNSEHVRNSDYAPSRLQVRE 335
>UniRef50_P34567 Cluster: Probable TFIIH basal transcription factor
complex p44 subunit; n=2; Caenorhabditis|Rep: Probable
TFIIH basal transcription factor complex p44 subunit -
Caenorhabditis elegans
Length = 376
Score = 40.3 bits (90), Expect = 0.052
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Frame = +1
Query: 70 VLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEV 243
++ MI +D S +M + P+R A+ NP +GL+T + +
Sbjct: 61 IMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADR 120
Query: 244 LATLTSDVGRIMSKLHRVQP---NGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPV 414
L +T ++ + L+ + GD +L +++A LK G H R VV V S +
Sbjct: 121 LTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPG--HVSREVVLVISAL 178
Query: 415 NT-DEKELVKLAKRLKKEKVNCDVVSFGED 501
+T D + + +K+ + C + +
Sbjct: 179 STIDPGNIYSTIETMKRMNIRCSAIGLSAE 208
>UniRef50_Q98L15 Cluster: Mll1222 protein; n=3; Rhizobiales|Rep:
Mll1222 protein - Rhizobium loti (Mesorhizobium loti)
Length = 638
Score = 38.7 bits (86), Expect = 0.16
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Frame = +1
Query: 133 PTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN---VEVLATLTSDVGRIMSKLHRVQP 303
P +L + A L+ SK R+ ++ + ++T A ++ T ++ +I++ + + P
Sbjct: 287 PDKLPLLKSAFRLLV-SKLRA--DDTISIVTYAGEAGTVLMPTRAAEKDKILNAIDNLTP 343
Query: 304 NGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVN---TDEKELVKLAKRLKKEKVN 474
G GI+ A+ + K+ R+++ N +D+ +L +L ++ +K V
Sbjct: 344 GGSTAGEAGIKEAYKLAQQSFVKDGVNRVMLATDGDFNVGQSDDDDLKRLIEQERKSGVF 403
Query: 475 CDVVSFGEDSENNPLLTTFVNTLNG 549
V FG D+ N+ ++ T NG
Sbjct: 404 LSVFGFGHDNLNDQMMQTIAQNGNG 428
>UniRef50_Q2BJ22 Cluster: Putative uncharacterized protein; n=1;
Neptuniibacter caesariensis|Rep: Putative
uncharacterized protein - Neptuniibacter caesariensis
Length = 445
Score = 38.3 bits (85), Expect = 0.21
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 115 RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLHR 294
++G +L ++A + + ++++ + V + NV V AT SD I ++R
Sbjct: 78 KSGSMQGDKLFRAKEAAIMAINRLSQNDIVSVVSYDSRVNVVVPATKVSDTNTIARAINR 137
Query: 295 VQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVN---TDEKELVKLAKRLKKE 465
+Q NG+ L G+ L+ N R+++ N + EL KL L KE
Sbjct: 138 IQANGNTALFAGVSKGANELRKFLDLNKVNRVILLSDGLANIGPSTPNELGKLGLSLAKE 197
Query: 466 KVNCDVVSFGEDSENNPLLTTFVNTLNG 549
++ + G N L+T +G
Sbjct: 198 GMSVTTIGLGL-GYNEDLMTQLAGFSDG 224
>UniRef50_A3ZT14 Cluster: Putative uncharacterized protein; n=1;
Blastopirellula marina DSM 3645|Rep: Putative
uncharacterized protein - Blastopirellula marina DSM
3645
Length = 616
Score = 37.9 bits (84), Expect = 0.28
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +1
Query: 229 ANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGS 408
A + + +T D IM L R+Q G N GI +A+ A K R+++
Sbjct: 300 AGMVLNSTNGDDKSTIMEALDRLQAGGSTNGGQGIELAYQAATENFIKGGVNRVILCTDG 359
Query: 409 PVN---TDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNG 549
N T +LV +A K V V+ FG + N+ ++ NG
Sbjct: 360 DFNVGVTSTSDLVTMAADKAKSGVFLSVMGFGTGNHNDAMMEELSGKANG 409
>UniRef50_UPI0000498DEF Cluster: TFIIH basal transcription factor
complex subunit; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: TFIIH basal transcription factor complex
subunit - Entamoeba histolytica HM-1:IMSS
Length = 363
Score = 36.7 bits (81), Expect = 0.64
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 2/146 (1%)
Frame = +1
Query: 94 VDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGR 273
+D S M D+ P R+ Q + NP + +GL+ N
Sbjct: 44 IDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRNKTAEQQFPLSRNL 103
Query: 274 IMSK-LHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT-DEKELVKLA 447
I+ K + G ++L + +A L N R ++ V S + T D +
Sbjct: 104 IIQKEMKWGNCEGQMSLQISLDLAQQILSTTS--NSSSREIIIVTSSITTCDPGNIYDTI 161
Query: 448 KRLKKEKVNCDVVSFGEDSENNPLLT 525
+ LKK + C V+SF + LLT
Sbjct: 162 ETLKKTTIRCSVISFAPEMHITRLLT 187
>UniRef50_Q4DY61 Cluster: DNA repair and transcription factor
protein, putative; n=2; Trypanosoma|Rep: DNA repair and
transcription factor protein, putative - Trypanosoma
cruzi
Length = 356
Score = 36.3 bits (80), Expect = 0.84
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Frame = +1
Query: 82 TMIXVDNSDYMRNG-DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-----VEV 243
T++ +D S+ M + D+LPTRL A + + H+ +NP ++G++T+ + +
Sbjct: 4 TVLLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNS 63
Query: 244 LATLTSDVGRIMS-KLHRVQPNGDINLLTGIRIA--------HLALKHRQGKNH------ 378
T SD+ + + K +G ++L G+R A +A + R+ + H
Sbjct: 64 CTTNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPHAGGKEA 123
Query: 379 ------KMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSF 492
++RI++ S D ++ + K + K +V DV+SF
Sbjct: 124 REEPTARLRILLVSSSVTVIDPHDVFGVIKMMAKLRVRVDVISF 167
>UniRef50_Q5KBR6 Cluster: RNA polymerase II transcription factor,
putative; n=2; Filobasidiella neoformans|Rep: RNA
polymerase II transcription factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 460
Score = 36.3 bits (80), Expect = 0.84
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +1
Query: 64 KMVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--V 237
+ ++ I +D S+ M + D+ PTR + + NP +G++ + +
Sbjct: 96 RSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQNPLGQIGVIAMRDRLS 155
Query: 238 EVLATL---TSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVF 399
EVL + ++ R +S +++P+G+ +L G+ +A + H + +V+F
Sbjct: 156 EVLIPMGGNPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHLPSTSSLEILVIF 212
>UniRef50_Q5BW88 Cluster: SJCHGC09266 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09266 protein - Schistosoma
japonicum (Blood fluke)
Length = 234
Score = 35.5 bits (78), Expect = 1.5
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Frame = +1
Query: 70 VLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEV 243
++ + +D S M D P RL A NP + +G++ ++ E
Sbjct: 70 MMRHLFLIIDLSQAMNEQDLKPNRLICTIKAACTFVREYFDQNPISQLGIIVTSDRRAER 129
Query: 244 LATLTSDVGRIMSKLHRVQPN---GDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPV 414
L L+ + ++ L + G+ +L + +A LK+ H IVV + S
Sbjct: 130 LTELSGNPRPHLAALQSLYSRTCAGEPSLQNALLLAESRLKYTI---HHNEIVVLIASLT 186
Query: 415 NTDEKELVKLAKRLKKEKVNCDVVS 489
D ++ + K L +++C V+S
Sbjct: 187 TCDPGDIHQTIKSLSSNRIHCSVIS 211
>UniRef50_Q73NA4 Cluster: BatB protein, putative; n=1; Treponema
denticola|Rep: BatB protein, putative - Treponema
denticola
Length = 322
Score = 35.1 bits (77), Expect = 1.9
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Frame = +1
Query: 79 STMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLAT-L 255
S + D S M D P+R+ Q+ + ++ +++PE+ VGL+ VL+ L
Sbjct: 83 SVIFVSDISKSMSLQDIHPSRIAVQRQFLKILLEKMHKTSPESAVGLVITKGEGVLSVPL 142
Query: 256 TSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKEL 435
+ + + S ++ + P + T + L G+N ++ + + L
Sbjct: 143 SFEKNALSSAINALSPLILSSTGTNLEAGVLRALDSFGENRGNSKIIVLCTDGGETSGSL 202
Query: 436 VKLAKRLKKEKVNCDVVSFG 495
+ A+++KK +V FG
Sbjct: 203 LHAAEKIKKTDAILIIVGFG 222
>UniRef50_Q3ASY8 Cluster: Parallel beta-helix repeat; n=4; cellular
organisms|Rep: Parallel beta-helix repeat - Chlorobium
chlorochromatii (strain CaD3)
Length = 36805
Score = 35.1 bits (77), Expect = 1.9
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Frame = +1
Query: 166 NLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAH 345
N+ + T N N G +++ + + SDVG+I+ + + + ++ I
Sbjct: 30609 NITIETITAGNSTNGYGNVSITAAAIPSGGNSDVGKILDRDGTAAEDSEYDITANNLILK 30668
Query: 346 LALKHRQGKNHKMRIVVFVGSPVN-----TDEKELVKLAKRLKKEKVNCDVVSFGEDSEN 510
G NH V + + KELV + +K+ DV G D+ +
Sbjct: 30669 AGYAVGDGNNHIEETVTTLTANAGIGGLYVTAKELVS-GGNVTVDKLTVDVNRVGTDA-S 30726
Query: 511 NPLLTTFVNTLNGKD-TSTGGSHLVSVPAGGCVVLS 615
P T T+ +D +TG H+V G VVL+
Sbjct: 30727 VPTTATGTATVTQEDLIATGAGHIVLDVTSGDVVLN 30762
>UniRef50_Q5ZRM5 Cluster: TPR (Repeat) domain protein; n=4;
Legionella pneumophila|Rep: TPR (Repeat) domain protein
- Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 310
Score = 34.7 bits (76), Expect = 2.6
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 5/170 (2%)
Frame = +1
Query: 55 KNTKMVLESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN 234
++T ++ ++ +D SD M GD P RL + + H GL+
Sbjct: 85 QSTYKPIQPRVLLLDMSDKMMLGDLSPNRLSRAKFKL----HDLFTRKDIGQFGLIVFTG 140
Query: 235 VE-VLATLTSDVGRIMSKLHRVQPN----GDINLLTGIRIAHLALKHRQGKNHKMRIVVF 399
V++ LT D I S L + P+ NL + + A +K + G +H +V+
Sbjct: 141 EPFVVSPLTDDGQTISSLLSALTPDIMPVAGYNLDSALDEASQLIK-QAGYDHGEILVLT 199
Query: 400 VGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNG 549
+P ++ ++ AK+L + + ++ D NPL F N +G
Sbjct: 200 AETPSSS----AIEKAKKLAESGIFSSIMPIRADENLNPLFQRFANAGDG 245
>UniRef50_Q02A45 Cluster: Von Willebrand factor, type A precursor;
n=1; Solibacter usitatus Ellin6076|Rep: Von Willebrand
factor, type A precursor - Solibacter usitatus (strain
Ellin6076)
Length = 311
Score = 34.7 bits (76), Expect = 2.6
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +1
Query: 193 SNPENNVGLLTL-ANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQG 369
SNPE+ L+ ++ ++ LTSD G I L + +G LL I +A +KH +
Sbjct: 119 SNPEDEFFLVEFDSSPRLVVPLTSDTGTIEDHLTFSRSHGSTALLDAIFLALHEMKHSK- 177
Query: 370 KNHKMRIVVFVGSPVNT--DEKELVKLAK 450
KN K +++ G ++ EKE+ + K
Sbjct: 178 KNKKALLIISDGGDNHSRYSEKEVSSVVK 206
>UniRef50_Q3A188 Cluster: Von Willebrand factor type A domain
protein; n=1; Pelobacter carbinolicus DSM 2380|Rep: Von
Willebrand factor type A domain protein - Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 442
Score = 34.3 bits (75), Expect = 3.4
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Frame = +1
Query: 241 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 420
V A SD+G I +++ R++P G L + ++ + R+V+ N
Sbjct: 116 VPAQPVSDIGDIEARIRRIRPGGSTALFGAVSQGAAEVRKHSDAPYVNRVVLLSDGLANV 175
Query: 421 DEK---ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNG 549
+L +L L KE ++ V G D N L+T +G
Sbjct: 176 GPSRPADLARLGAALLKEGISVTTVGVGTDF-NEDLMTQLAERSDG 220
>UniRef50_A7NWY7 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=5; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 518
Score = 34.3 bits (75), Expect = 3.4
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 208 NVGLLTLANVEVLATLTSDVGRIMSKLHRVQ---PNGDINLLTGIR--IAHLALKHRQGK 372
++ L+LAN EVLA ++ V R+ +++ RV+ I ++ + I L
Sbjct: 114 SLAALSLANTEVLAGISDQVNRLQNEMQRVEFEASQSQIKIVDKLNQGINDAKLDQDFAN 173
Query: 373 NHKMRIVVFVGSPVNTDEKELVKLAKRLKKEK 468
+ I + VG PV + E+ K K L+KEK
Sbjct: 174 DMLEEIAMAVGVPV--EPSEISKELKNLRKEK 203
>UniRef50_Q7RCV3 Cluster: CCAAT-box DNA binding protein subunit B;
n=3; Plasmodium (Vinckeia)|Rep: CCAAT-box DNA binding
protein subunit B - Plasmodium yoelii yoelii
Length = 859
Score = 33.9 bits (74), Expect = 4.5
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 424 EKELVKLAKRLKKEKVNCDVVSFGEDSENNPLL-TTFVNTLNGKDTS 561
+ EL L K KK+K+N + FG+DS+NN L+ N +N K S
Sbjct: 132 DTELKILGKNKKKKKINXNKFGFGKDSKNNLLIEKKEPNKINSKFNS 178
>UniRef50_Q23A27 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 919
Score = 33.9 bits (74), Expect = 4.5
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 445 LVLRVPFRQC*QGNRQKLLCAS--CDSFPDGVLKLNV 341
L L+V FRQC G QK +S CD PDG LNV
Sbjct: 655 LNLKVDFRQCITGEVQKQFFSSIICDQCPDGKYSLNV 691
>UniRef50_A6LJ57 Cluster: D-alanine--D-alanine ligase; n=1;
Thermosipho melanesiensis BI429|Rep:
D-alanine--D-alanine ligase - Thermosipho melanesiensis
BI429
Length = 310
Score = 33.5 bits (73), Expect = 5.9
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 382 MRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGK 552
M+I V +N +EK+++ K +K C++V F ED FV L+ K
Sbjct: 1 MKIAVVCDKNINNEEKKMINAIKDAISKKYKCEIVRFDEDFLRKINKYDFVFNLSNK 57
>UniRef50_Q0U378 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 458
Score = 33.5 bits (73), Expect = 5.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 657 CSITTYQRTCYQSLRKHNTASSWHRHKVTSPS 562
C+I T+Q TC +LR+ + RHK+T+ S
Sbjct: 15 CNIVTFQFTCQHTLRRRRSRCGGTRHKITANS 46
>UniRef50_A7DPY4 Cluster: von Willebrand factor, type A precursor;
n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep: von
Willebrand factor, type A precursor - Candidatus
Nitrosopumilus maritimus SCM1
Length = 316
Score = 33.5 bits (73), Expect = 5.9
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 88 IXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTL-ANVEVLATLTSD 264
I +D S+ M D+ PTRL A ++A+N + + P++NVG++ + ++ LT D
Sbjct: 92 IVLDGSESMAATDYEPTRLDAAKNAINNLI---LKMGPQHNVGVVLFESGATTVSYLTPD 148
Query: 265 VGRIMSKLHRVQ 300
+ ++ + ++
Sbjct: 149 KEKSVNAISSIE 160
>UniRef50_Q97HX3 Cluster: Uncharacterized phage related protein;
n=1; Clostridium acetobutylicum|Rep: Uncharacterized
phage related protein - Clostridium acetobutylicum
Length = 1819
Score = 33.1 bits (72), Expect = 7.9
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 403 GSPVNTDEKELVKLAKRLKKEKVNCDVVSFGE-DSENNPL-LTTFVNTLNGK 552
G+ + + LV L K KK KV D + F DS+ N LTT +N +NGK
Sbjct: 398 GTAATSLQAGLVNLTKPTKKMKVALDELKFSAFDSKGNMKDLTTIINEMNGK 449
>UniRef50_Q1N498 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 731
Score = 33.1 bits (72), Expect = 7.9
Identities = 26/102 (25%), Positives = 39/102 (38%)
Frame = +1
Query: 244 LATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTD 423
L ++ I+ KL V PNG +L+ G+R A L + I + N
Sbjct: 404 LPATQKNIAEIIRKLDLVLPNGGTHLMDGVRFALSGL----DADRTSAIWLVTDGVTNVG 459
Query: 424 EKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNG 549
E + K LK++ + G + N PLL NG
Sbjct: 460 ETKQRKFVDLLKQKDIRVFTFIMG-NGANRPLLKAITKASNG 500
>UniRef50_A7CTN6 Cluster: Putative uncharacterized protein
precursor; n=1; Opitutaceae bacterium TAV2|Rep: Putative
uncharacterized protein precursor - Opitutaceae
bacterium TAV2
Length = 477
Score = 33.1 bits (72), Expect = 7.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 457 KKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAG 597
K+ ++ D + G SENN + T L+ +D + G + LV VP G
Sbjct: 39 KESRITMDPIPPGPYSENNTIAITLRYHLSPRDAAAGDTRLVLVPLG 85
>UniRef50_O45444 Cluster: Putative uncharacterized protein clec-63;
n=6; Caenorhabditis|Rep: Putative uncharacterized
protein clec-63 - Caenorhabditis elegans
Length = 411
Score = 33.1 bits (72), Expect = 7.9
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +1
Query: 226 LANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGK----NHKMRIV 393
+A++ +L ++ + S L++V + D L GI A L+ + N+K +V
Sbjct: 117 VADLNLLQSIDDLYQSVFSTLNQVSNSDDSFLAKGIGAAENVLQSGRTNGVRSNYKRLVV 176
Query: 394 VFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 507
V+ + E + + +A RLK V V+F +D +
Sbjct: 177 VYASAYKGEGELDPIPVADRLKSSGVVVSTVAFDQDGD 214
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,681,060
Number of Sequences: 1657284
Number of extensions: 14452694
Number of successful extensions: 36889
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 35532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36837
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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