Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d12
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...   164   6e-41
01_06_0065 + 26107522-26107700,26110875-26111253                       29   5.4  
06_02_0330 - 14492988-14493299                                         28   9.5  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score =  164 bits (399), Expect = 6e-41
 Identities = 102/230 (44%), Positives = 135/230 (58%), Gaps = 6/230 (2%)
 Frame = +1

Query: 73  LESTMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 246
           LE+T+I VD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 247 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 426
              TSD  + ++ +H ++ +G+ NL   + IA L LK+R  K    RIVVFVGSPV  DE
Sbjct: 65  LAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVK-DE 123

Query: 427 KELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG-SHLVSVPAG-- 597
           K L  + K+LKK  V+ DVV FGE  +  P        L     + GG SH+V +P G  
Sbjct: 124 K-LETIGKKLKKYNVSLDVVEFGESDDEKP------EKLEALVAAVGGSSHIVHIPPGED 176

Query: 598 -GCVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVS 744
              V+ +  +IT                  +E+ VDPNVDPE A ALR+S
Sbjct: 177 LRAVLANTPIITG----DEGGGAAAGGASRYEYNVDPNVDPEFAEALRLS 222



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 685 FEFGVDPNVDPELALALRVSMEE 753
           +E+ VDPN DPELA   R++  E
Sbjct: 237 YEYSVDPNADPELAETFRLAAGE 259


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 576 PCVCASWRLCC 608
           PC C +WRLCC
Sbjct: 20  PCPCPAWRLCC 30


>06_02_0330 - 14492988-14493299
          Length = 103

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 621 FDNKSSDRW*WSRPFWLWFVSFRIWSRSQCRPRARISSTCVDGRTKATSR 770
           FD+     W  +   W W  S  I +  + R  A ++  C  GR  A  R
Sbjct: 20  FDSHDGGEWKVTSQRWRWLNSGNIAATQRWRGGAPVAPDCTKGRAGAARR 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,936,890
Number of Sequences: 37544
Number of extensions: 408801
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)