Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d12
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)              307   6e-84
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score =  307 bits (754), Expect = 6e-84
 Identities = 148/220 (67%), Positives = 175/220 (79%)
 Frame = +1

Query: 112 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 291
           MRNGDFLPTR+QAQQDAV+L+CHSKTR NPENNVGL+T A++EVL TLT+DVG++++ LH
Sbjct: 1   MRNGDFLPTRIQAQQDAVSLICHSKTRQNPENNVGLMTTASLEVLVTLTTDVGKLLTTLH 60

Query: 292 RVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKV 471
           +VQP GD+N LT ++ AHL LKHRQGKNHKMRIVVFVGSP+ +DEKE+VKLAK+LKKEKV
Sbjct: 61  KVQPQGDVNFLTAVKKAHLVLKHRQGKNHKMRIVVFVGSPIESDEKEIVKLAKKLKKEKV 120

Query: 472 NCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXX 651
           N DVV+FGE+  N   LT F+N LNGKD +   SHLV+VP G   +LS AL++S      
Sbjct: 121 NVDVVNFGEEESNTEKLTAFINILNGKDGNL--SHLVTVPPG--PILSNALVSSAIVVGE 176

Query: 652 XXXXXXXXXXXFEFGVDPNVDPELALALRVSMEEQRQRQE 771
                      FEFGVDPN DPELALALRVSMEEQRQRQE
Sbjct: 177 DGAGAMDMGSGFEFGVDPNADPELALALRVSMEEQRQRQE 216


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 79  STMIXVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPEN 207
           S M+  DN  ++ N DF   ++   ++ +N V  S   + PEN
Sbjct: 74  SVMVSHDNERFVDNNDFTSRKMLTAEEMINAVFESNLNNRPEN 116


>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 208 NVGLLT--LANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTG 330
           N+G+L   L N E      +D  R+  K+H  Q  GD +L  G
Sbjct: 835 NIGILNCKLGNYEEAIVNLTDALRLFEKIHNDQEQGDAHLSIG 877


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,451,756
Number of Sequences: 59808
Number of extensions: 479539
Number of successful extensions: 1055
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)