Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d11
(758 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in P6.... 185 9e-46
UniRef50_P25695 Cluster: Uncharacterized 41.5 kDa protein in P6.... 165 1e-39
UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in P6.... 82 2e-14
UniRef50_Q8V5R3 Cluster: ORF92; n=4; Nucleopolyhedrovirus|Rep: O... 72 2e-11
UniRef50_Q9J871 Cluster: ORF64; n=5; Nucleopolyhedrovirus|Rep: O... 70 5e-11
UniRef50_Q0IL13 Cluster: ORF106; n=2; Nucleopolyhedrovirus|Rep: ... 68 3e-10
UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12... 67 5e-10
UniRef50_Q00732 Cluster: p48 protein; n=16; Nucleopolyhedrovirus... 60 6e-08
UniRef50_A0EYY3 Cluster: P40; n=4; Nucleopolyhedrovirus|Rep: P40... 60 8e-08
UniRef50_Q80LL9 Cluster: Budded virus/occlusion-derived virus st... 58 2e-07
UniRef50_Q9YMM5 Cluster: LdOrf-102 peptide; n=1; Lymantria dispa... 53 9e-06
UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispa... 51 4e-05
UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12... 50 5e-05
UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata nucleopolyhe... 50 8e-05
UniRef50_Q99GV9 Cluster: ORF93; n=3; Nucleopolyhedrovirus|Rep: O... 47 4e-04
UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_P24651 Cluster: p48 protein; n=7; Nucleopolyhedrovirus|... 47 4e-04
UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P1... 45 0.002
UniRef50_Q9DVW7 Cluster: PxORF66 peptide; n=1; Plutella xylostel... 40 0.067
UniRef50_Q4QDY2 Cluster: Putative uncharacterized protein; n=2; ... 36 1.1
UniRef50_UPI00006CC429 Cluster: hypothetical protein TTHERM_0013... 34 3.3
UniRef50_O77347 Cluster: Zinc finger protein, putative; n=4; Pla... 34 4.4
UniRef50_Q12267 Cluster: Structural maintenance of chromosomes p... 34 4.4
UniRef50_Q8JG61 Cluster: Protein 4.1; n=1; Danio rerio|Rep: Prot... 33 5.8
UniRef50_Q31FP5 Cluster: Methyl-accepting chemotaxis protein pre... 33 7.7
>UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in
P6.9-VP48 intergenic region; n=7;
Nucleopolyhedrovirus|Rep: Uncharacterized 13.3 kDa
protein in P6.9-VP48 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 122
Score = 185 bits (451), Expect = 9e-46
Identities = 99/123 (80%), Positives = 102/123 (82%)
Frame = +1
Query: 64 MIASINDIDDMDTGNNMSQTXXXXXXXXXXXXXXQTQMAAVDMLQTINTTASQTAASLLI 243
MIASIND D MDT +NMSQ QTQMAAVDMLQTINT ASQTAASLLI
Sbjct: 1 MIASINDTD-MDTDDNMSQARRNRRNRPPARPSAQTQMAAVDMLQTINTAASQTAASLLI 59
Query: 244 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVI 423
NDITPNKTESLKILSTQSVGAR+LLEPMQAN + IKLNRIETVNVLDFLGSVYDNTIQVI
Sbjct: 60 NDITPNKTESLKILSTQSVGARSLLEPMQANASTIKLNRIETVNVLDFLGSVYDNTIQVI 119
Query: 424 VTE 432
VTE
Sbjct: 120 VTE 122
>UniRef50_P25695 Cluster: Uncharacterized 41.5 kDa protein in
P6.9-VP48 intergenic region; n=13;
Nucleopolyhedrovirus|Rep: Uncharacterized 41.5 kDa
protein in P6.9-VP48 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 361
Score = 165 bits (401), Expect = 1e-39
Identities = 82/101 (81%), Positives = 85/101 (84%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQN 634
MSAIALYLEINKLRLKIDEPMQLAIWPQ+FPLLCDEHQ+VQLNTDVLINF+MHVARKSQN
Sbjct: 1 MSAIALYLEINKLRLKIDEPMQLAIWPQLFPLLCDEHQSVQLNTDVLINFMMHVARKSQN 60
Query: 635 TILNNNAAIASQYXXXXXXXXXXXXXXXHPTPRPVINLFAR 757
TILNNNAAIASQY PTPRPVINLFAR
Sbjct: 61 TILNNNAAIASQY-AAGNADVVAAPASAQPTPRPVINLFAR 100
>UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in
P6.5-VP48 intergenic region; n=5;
Nucleopolyhedrovirus|Rep: Uncharacterized 12.2 kDa
protein in P6.5-VP48 intergenic region - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 112
Score = 81.8 bits (193), Expect = 2e-14
Identities = 41/85 (48%), Positives = 56/85 (65%)
Frame = +1
Query: 169 TQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKI 348
TQ+AA +ML +N ++TAAS ++ D + NK SL L QS+ AR L+E +QA I
Sbjct: 27 TQLAAAEMLHNMN--GAETAASFIVKDASENKIASLTTLGNQSIAARKLVESLQAGAPTI 84
Query: 349 KLNRIETVNVLDFLGSVYDNTIQVI 423
KLNR +TVNVL FL VY N ++V+
Sbjct: 85 KLNREDTVNVLKFLNDVYTNQLEVV 109
>UniRef50_Q8V5R3 Cluster: ORF92; n=4; Nucleopolyhedrovirus|Rep:
ORF92 - Helicoverpa zea SNPV
Length = 369
Score = 71.7 bits (168), Expect = 2e-11
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQN 634
MS + L+LEI ++ KID M ++IWP+ FPLL D + + L D L++F++ AR ++
Sbjct: 1 MSGVMLFLEIENMKNKIDRRMNMSIWPKFFPLLVDANATLDLTLDELVDFLVTTARIAEI 60
Query: 635 TILNNNAAIASQY 673
+NNAA+ASQY
Sbjct: 61 DRTDNNAALASQY 73
>UniRef50_Q9J871 Cluster: ORF64; n=5; Nucleopolyhedrovirus|Rep:
ORF64 - Spodoptera exigua MNPV
Length = 388
Score = 70.1 bits (164), Expect = 5e-11
Identities = 34/99 (34%), Positives = 54/99 (54%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQN 634
MS++ L+LEI +++ KID M +AIWP+ FPLL D ++ L+ F++ VA+ ++
Sbjct: 1 MSSVMLFLEIERIKNKIDSEMNMAIWPKFFPLLADPDGHINLSLSEFQQFLVTVAQMART 60
Query: 635 TILNNNAAIASQYXXXXXXXXXXXXXXXHPTPRPVINLF 751
+ NNAA+AS PR ++NLF
Sbjct: 61 AQIENNAALASAARDNTMSTTMTSSTATPSPPRNILNLF 99
>UniRef50_Q0IL13 Cluster: ORF106; n=2; Nucleopolyhedrovirus|Rep:
ORF106 - Leucania separata nuclear polyhedrosis virus
(LsNPV)
Length = 382
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/73 (42%), Positives = 47/73 (64%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQN 634
MS++ L+LEI L+ KID+ M + IWP+ FPLL D ++QL D + +F++ AR S+
Sbjct: 1 MSSVMLFLEIENLKNKIDKRMNMGIWPKFFPLLVDPQASIQLTIDEINDFLVTTARVSEI 60
Query: 635 TILNNNAAIASQY 673
+N AI SQ+
Sbjct: 61 DRTESNVAITSQF 73
>UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12 -
Chrysodeixis chalcites nucleopolyhedrovirus
Length = 117
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/83 (33%), Positives = 51/83 (61%)
Frame = +1
Query: 175 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKL 354
M + + LQ +N T T A +++ND P K +++++S QS A+ +LE + E I+L
Sbjct: 35 MNSAEFLQNLNQT--NTVADVILNDTNPQKRNAIRVISKQSAIAKTILEAISNEEQSIRL 92
Query: 355 NRIETVNVLDFLGSVYDNTIQVI 423
N ++T+NVL + ++YDN ++
Sbjct: 93 NTVKTINVLQLMSNIYDNKFVIV 115
>UniRef50_Q00732 Cluster: p48 protein; n=16;
Nucleopolyhedrovirus|Rep: p48 protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 387
Score = 60.1 bits (139), Expect = 6e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3
Query: 3 RHIITKYQLDNEISLLIELNHDCFNK 80
RHIITKYQLDNEISLLIELNHDCFNK
Sbjct: 362 RHIITKYQLDNEISLLIELNHDCFNK 387
>UniRef50_A0EYY3 Cluster: P40; n=4; Nucleopolyhedrovirus|Rep: P40 -
Ecotropis obliqua NPV
Length = 385
Score = 59.7 bits (138), Expect = 8e-08
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQN-VQLNTDVLINFIMHVARKSQ 631
MS+I L+ EI LR KID MQ+ IWP++F LL + + N + L+ D I F+++VA +
Sbjct: 1 MSSIDLFNEIVILRDKIDPQMQMDIWPKLFNLLPEPNDNTINLSFDEFIEFLVNVATIAN 60
Query: 632 NTILNNNAAIASQY 673
N ++ N A+ASQ+
Sbjct: 61 NKNVDENVALASQH 74
>UniRef50_Q80LL9 Cluster: Budded virus/occlusion-derived virus
structural protein; n=1; Adoxophyes honmai NPV|Rep:
Budded virus/occlusion-derived virus structural protein
- Adoxophyes honmai nucleopolyhedrovirus
Length = 364
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/71 (40%), Positives = 45/71 (63%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQN 634
MS + L+LEI KL+ KID+ MQ+ IWP+ FPLL + + + L+ L F+ + AR +
Sbjct: 1 MSEVMLFLEIEKLKNKIDKEMQMDIWPKFFPLLSNPNATLNLSMQDLFEFLENTARHAAL 60
Query: 635 TILNNNAAIAS 667
++AA+AS
Sbjct: 61 HNDTDSAALAS 71
>UniRef50_Q9YMM5 Cluster: LdOrf-102 peptide; n=1; Lymantria dispar
MNPV|Rep: LdOrf-102 peptide - Lymantria dispar
multicapsid nuclear polyhedrosis virus (LdMNPV)
Length = 381
Score = 52.8 bits (121), Expect = 9e-06
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +2
Query: 455 MSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNT--DVLINFIMHVARKS 628
M+A+ L+ EI LR +ID MQ+ +W ++F LLCD +L+ + I + VA S
Sbjct: 1 MTAVNLFNEIVNLRDRIDPQMQMDVWLRLFRLLCDNGHRAELDLPYEEFIELLTIVASAS 60
Query: 629 QNTILNNNAAIASQY 673
+N + +NAA+AS +
Sbjct: 61 RNNEVRDNAALASAH 75
>UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispar
MNPV|Rep: LdOrf-103 peptide - Lymantria dispar
multicapsid nuclear polyhedrosis virus (LdMNPV)
Length = 121
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Frame = +1
Query: 190 MLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 369
++ +N S A +L ND + NK ++ LS S A+++L +Q N+ ++L+ +
Sbjct: 45 LINALNDNMSSVALHIL-NDTSENKADTFGKLSRTSAVAKSILADIQDNQETMRLDAAKG 103
Query: 370 VNVLDFLGSVYDNTIQVI 423
V VL L ++YDNTI++I
Sbjct: 104 VAVLQLLNNIYDNTIRLI 121
>UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12 -
Agrotis segetum nuclear polyhedrosis virus (AsNPV)
Length = 113
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/83 (31%), Positives = 47/83 (56%)
Frame = +1
Query: 175 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKL 354
M A +L ++N T T A L++ND +K S+ ++ S A+ +L+ + E+ ++L
Sbjct: 32 MWADQLLNSLNETT--TVADLILNDTDEHKRISMGVIGQHSAIAKTILDYIDEEES-LRL 88
Query: 355 NRIETVNVLDFLGSVYDNTIQVI 423
+ T+NVL + +YDN I V+
Sbjct: 89 GTVNTINVLKLMSDIYDNKIPVV 111
>UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: P12 - Clanis bilineata
nucleopolyhedrosis virus
Length = 120
Score = 49.6 bits (113), Expect = 8e-05
Identities = 23/73 (31%), Positives = 44/73 (60%)
Frame = +1
Query: 190 MLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 369
M+ T+N + + A+L++ND + K S ++LS S A+N+ + + + ++LN +
Sbjct: 47 MVNTLNEYTN-SLATLILNDESAKKRVSFEVLSKSSAAAKNIFKDIVDDRDAVRLNTLRA 105
Query: 370 VNVLDFLGSVYDN 408
V+VL L ++YDN
Sbjct: 106 VSVLRLLSNIYDN 118
>UniRef50_Q99GV9 Cluster: ORF93; n=3; Nucleopolyhedrovirus|Rep:
ORF93 - Helicoverpa zea SNPV
Length = 122
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 169 TQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKI 348
+++ + +Q++N T AS ++ D TP+K L IL+ QS A+ LL+ ++ KI
Sbjct: 37 SEVPIAEFVQSLNEL--DTLASTILKDPTPHKRNVLSILAKQSAVAKRLLDVIENGNDKI 94
Query: 349 KLN-RIETVNVLDFLGSVYDN 408
KLN ++ + L ++DN
Sbjct: 95 KLNGSMQAIETLRLFSDIFDN 115
>UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1;
Spodoptera litura NPV|Rep: Putative uncharacterized
protein - Spodoptera litura multicapsid
nucleopolyhedrovirus (SpltMNPV)
Length = 121
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 184 VDMLQTINTTAS-QTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNR 360
+D Q IN T+A ++ D + N+ E+L++LS QS A+ ++ + ++K N
Sbjct: 40 IDPSQIINELNDVNTSAHAVLTDRSDNRLETLQVLSNQSNIAKKIVTAANNRDDRVKFNV 99
Query: 361 IETVNVLDFLGSVYDNTIQVI 423
+ET+ +L + +YDN ++
Sbjct: 100 VETMELLRLMTDLYDNKFLIV 120
>UniRef50_P24651 Cluster: p48 protein; n=7;
Nucleopolyhedrovirus|Rep: p48 protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 411
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 3 RHIITKYQLDNEISLLIELNHDCFNK 80
R II YQLDNEISLL++LNHDCF++
Sbjct: 385 RRIIVDYQLDNEISLLLDLNHDCFDR 410
>UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1;
Adoxophyes honmai NPV|Rep: Putative uncharacterized
protein - Adoxophyes honmai nucleopolyhedrovirus
Length = 99
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = +1
Query: 211 TASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFL 390
T T+A +ND + NK + LS +S A+ +L+ ++ +++ ++ N I TVN L L
Sbjct: 30 TEFNTSAKRFLNDTSKNKELYFRDLSKRSATAKKILKCIEDDQSAVQFNLISTVNFLKLL 89
Query: 391 GSVYDNTI 414
++DN +
Sbjct: 90 SDIHDNNV 97
>UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P12 -
Ecotropis obliqua NPV
Length = 140
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 AAVDMLQTINTTAS--QTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIK 351
+A+D + IN+ S + AS +I D + K + KILS S A+ +L+ ++ ++ +
Sbjct: 60 SAIDPVTLINSLNSNNKNMASFIIADESLKKQNTFKILSKVSSSAKGVLKDIEDDKESMP 119
Query: 352 LNRIETVNVLDFLGSVYDN 408
L + NVL L ++YDN
Sbjct: 120 LTTLRATNVLRLLSNIYDN 138
>UniRef50_Q9DVW7 Cluster: PxORF66 peptide; n=1; Plutella xylostella
granulovirus|Rep: PxORF66 peptide - Plutella xylostella
granulovirus
Length = 366
Score = 39.9 bits (89), Expect = 0.067
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 464 IALYLEINKLRLKI-DEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNTI 640
I L+L I L+ + DE M+L + Q FPLL + + + LN +L + + A +QN +
Sbjct: 14 IRLFLAIENLKKALDDEQMRLPYYEQFFPLLGNAN-TINLNVQMLQDLMNDAAVAAQNVM 72
Query: 641 LNNNAAIASQY 673
+ A+ +QY
Sbjct: 73 VTRGGAVYAQY 83
>UniRef50_Q4QDY2 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 90
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +2
Query: 197 KPSTPRPLKRPRRC*STTLRPIKLKV*KFCLLNLSERAICWNRCKP 334
KPS PRP++RPRRC S + PI L CL + +R C P
Sbjct: 13 KPSPPRPVERPRRC-SRPVLPIVLLQAFDCLTSAGKREKHQRGCSP 57
>UniRef50_UPI00006CC429 Cluster: hypothetical protein
TTHERM_00135980; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00135980 - Tetrahymena
thermophila SB210
Length = 422
Score = 34.3 bits (75), Expect = 3.3
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 473 YLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNTILNNN 652
YL++N +R KI + A+ +IF + ++LN + L++F ++ R +QN N+
Sbjct: 350 YLQLNFVRKKIVIAIVNAVLIEIFSFVIQFSYQMRLNKEYLLDFFQNIKRSAQNYFFINS 409
>UniRef50_O77347 Cluster: Zinc finger protein, putative; n=4;
Plasmodium|Rep: Zinc finger protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 836
Score = 33.9 bits (74), Expect = 4.4
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = -3
Query: 603 KFINTSVFNCTF*CSSQSKGNIWGHIANCIGSSIFNRNLFISKYNAIALIVTDDAHL--L 430
K+ +T+++N ++ + NI G NC+ + N N +I+KY +++L D+++L L
Sbjct: 266 KYAHTNIYNNND-NNNNNNNNINGVNENCLCNYTININQYINKYESVSLREVDESYLYSL 324
Query: 429 CNYHLD 412
Y LD
Sbjct: 325 KGYILD 330
>UniRef50_Q12267 Cluster: Structural maintenance of chromosomes
protein 4; n=5; Saccharomycetales|Rep: Structural
maintenance of chromosomes protein 4 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 1418
Score = 33.9 bits (74), Expect = 4.4
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 187 DMLQTINTTASQTAASLLINDITPNKTESLKI-LSTQSVGARNLLEPMQANETKIKLNRI 363
D L+ I T +L ND N+T +LK+ L QS + +E M+ + + K I
Sbjct: 1028 DELKVIEEQLKHTKLALAENDTNMNETLNLKVELKEQSEQLKEQMEDMEESINEFKSIEI 1087
Query: 364 ETVNVLDFLGSV 399
E N L+ L S+
Sbjct: 1088 EMKNKLEKLNSL 1099
>UniRef50_Q8JG61 Cluster: Protein 4.1; n=1; Danio rerio|Rep: Protein
4.1 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 1534
Score = 33.5 bits (73), Expect = 5.8
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +1
Query: 238 LINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQ 417
++ D+ P TE ++LS S ++ E QA E K ++ +IE V + + TIQ
Sbjct: 606 ILFDVHPQTTEISQLLSDVS---SSIPEGAQAEEVKREVEKIELVLPEKPKTLMREETIQ 662
Query: 418 VIVTE*VCVVGHDERYRVVFGNKQIAVKNRRA 513
VT H E+ V G Q A+ +RA
Sbjct: 663 SRVTTEEIQKEHQEQVTVNHGRSQTAILEQRA 694
>UniRef50_Q31FP5 Cluster: Methyl-accepting chemotaxis protein
precursor; n=1; Thiomicrospira crunogena XCL-2|Rep:
Methyl-accepting chemotaxis protein precursor -
Thiomicrospira crunogena (strain XCL-2)
Length = 330
Score = 33.1 bits (72), Expect = 7.7
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 265 TESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVIVTE 432
TE KI+ ARN +E M + + +++ +++ V DFL + DN Q+ + +
Sbjct: 265 TEIQKIIEELQQRARNAVEVMGSGQERVEATQMQAGKVNDFLHEIEDNLSQLKIAQ 320
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,303,635
Number of Sequences: 1657284
Number of extensions: 12784136
Number of successful extensions: 36245
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 34616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36193
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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