Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d09
         (223 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   1.2  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    20   3.6  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    20   3.6  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
          beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 37 VVCCLLLIQSF 5
          VVCCLLL+ S+
Sbjct: 6  VVCCLLLMFSY 16


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 19.8 bits (39), Expect = 3.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 15  INNKQHTTCLP 47
           +N  +HT+C+P
Sbjct: 349 VNTIKHTSCIP 359


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 19.8 bits (39), Expect = 3.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 15  INNKQHTTCLP 47
           +N  +HT+C+P
Sbjct: 349 VNTIKHTSCIP 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,564
Number of Sequences: 336
Number of extensions: 176
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  3009020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)