Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d08
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    32   0.090
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.9  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 524 FNVSHCLFVFWCTINTLSIGLLKSQHIKRTAKVKINIHSD 405
           F+V     +  C +NTL+ G ++S+H KR+ K++  + +D
Sbjct: 89  FDVDASAMLDICFLNTLTPGAIESEHKKRSVKLEFTVGAD 128


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 572  PDNHQVKIMLPWDQQGKN 625
            PD+H  ++M+PW   GK+
Sbjct: 1188 PDDHICEVMVPWIPSGKS 1205


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 429  FCSSFYMLRF*QTYRESIY 485
            FC++FY+LR   T RE+I+
Sbjct: 1369 FCTNFYVLRETSTARENIF 1387


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 429  FCSSFYMLRF*QTYRESIY 485
            FC++FY+LR   T RE+I+
Sbjct: 1369 FCTNFYVLRETSTARENIF 1387


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 93  KRPFNKQARILFHCKLDQKPLRVLAI 16
           K+P +++  IL HCKL  K L   AI
Sbjct: 25  KKPVDQRPVILTHCKLHSKMLEPKAI 50


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +2

Query: 539 NWRFYR*ELSLPDNHQVKIMLPWDQQ-----GKNGPKKPQPDHILVTEPKDEPVP 688
           N R  R +++LP   +  + + WD++        GP  P  + +  + P D P+P
Sbjct: 312 NARILRMKVNLPLTERGGLGVSWDEECPPMFNSVGPSPPAYEQVARSSPTDIPLP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,697
Number of Sequences: 5004
Number of extensions: 52893
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)