Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d08
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...    45   7e-05
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149           31   0.87 
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074...    28   8.1  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 679
           +VKIML WD +GK GP  P PD + +  PKDE
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDE 218


>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
          Length = 297

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 619 QERPEEATTRPHPGNRAQGRARAPR 693
           Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218


>05_06_0254 -
           26706830-26706943,26707063-26707193,26707330-26707417,
           26707970-26708087,26708184-26708332,26708787-26708840,
           26708963-26709031,26709146-26709246,26709391-26709473,
           26709846-26710041,26710171-26710279
          Length = 403

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 666 SVTRMWSGCGFFGPFLPCWSH 604
           S T M S CGF G    CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,236
Number of Sequences: 37544
Number of extensions: 312125
Number of successful extensions: 969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)