Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d08
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55715-1|CAA39248.1|  243|Homo sapiens protein ( Human Hums3 mRN...    62   2e-09
U14992-1|AAB60338.1|  243|Homo sapiens ribosomal protein S3 prot...    62   2e-09
U14991-1|AAB60337.1|  243|Homo sapiens ribosomal protein S3 prot...    62   2e-09
U14990-1|AAB60336.1|  243|Homo sapiens ribosomal protein S3 prot...    62   2e-09
S42658-1|AAB19349.2|  243|Homo sapiens S3 ribosomal protein prot...    62   2e-09
BC100284-1|AAI00285.1|  243|Homo sapiens ribosomal protein S3 pr...    62   2e-09
BC071917-1|AAH71917.1|  243|Homo sapiens ribosomal protein S3 pr...    62   2e-09
BC034149-1|AAH34149.1|  243|Homo sapiens ribosomal protein S3 pr...    62   2e-09
BC013196-1|AAH13196.1|  242|Homo sapiens Unknown (protein for IM...    62   2e-09
BC003577-1|AAH03577.1|  242|Homo sapiens Unknown (protein for IM...    62   2e-09
BC003137-1|AAH03137.1|  243|Homo sapiens ribosomal protein S3 pr...    62   2e-09
AY791291-1|AAV40835.1|  243|Homo sapiens ribosomal protein S3 pr...    62   2e-09
AK223048-1|BAD96768.1|  243|Homo sapiens ribosomal protein S3 va...    62   2e-09
AF281313-1|AAF82383.1|  158|Homo sapiens ribosomal protein S3 pr...    62   2e-09
AB062288-1|BAB93471.1|  117|Homo sapiens IMR-90 ribosomal protei...    62   2e-09
AB061838-1|BAB79476.1|  243|Homo sapiens ribosomal protein S3 pr...    62   2e-09
L27428-1|AAB02291.1|  361|Homo sapiens reverse transcriptase pro...    30   6.9  

>X55715-1|CAA39248.1|  243|Homo sapiens protein ( Human Hums3 mRNA
           for 40S ribosomal protein s3. ).
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>U14992-1|AAB60338.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>U14991-1|AAB60337.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>U14990-1|AAB60336.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>S42658-1|AAB19349.2|  243|Homo sapiens S3 ribosomal protein
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>BC100284-1|AAI00285.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>BC071917-1|AAH71917.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>BC034149-1|AAH34149.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>BC013196-1|AAH13196.1|  242|Homo sapiens Unknown (protein for
           IMAGE:4347401) protein.
          Length = 242

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 184 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 221


>BC003577-1|AAH03577.1|  242|Homo sapiens Unknown (protein for
           IMAGE:3544292) protein.
          Length = 242

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 184 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 221


>BC003137-1|AAH03137.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>AY791291-1|AAV40835.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>AK223048-1|BAD96768.1|  243|Homo sapiens ribosomal protein S3
           variant protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>AF281313-1|AAF82383.1|  158|Homo sapiens ribosomal protein S3
           protein.
          Length = 158

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 100 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 137


>AB062288-1|BAB93471.1|  117|Homo sapiens IMR-90 ribosomal protein
           S3 protein.
          Length = 117

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 59  KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 96


>AB061838-1|BAB79476.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLPWD  GK GPKKP PDH+ + EPKDE +P  P
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222


>L27428-1|AAB02291.1|  361|Homo sapiens reverse transcriptase
           protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 657 RMWSGCGFFGPFLPCWSHGNMILT*WLS 574
           R W GCG  G  L CW +  ++   W S
Sbjct: 215 RCWRGCGEIGTLLHCWWNCKLVQPLWKS 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,456,179
Number of Sequences: 237096
Number of extensions: 1892841
Number of successful extensions: 4271
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4268
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)