Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d08
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal prot...    49   5e-06
L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal prot...    49   5e-06
BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p pro...    49   5e-06
AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p pro...    49   5e-06
AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA...    49   5e-06

>X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal protein
           S3 protein.
          Length = 246

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 685
           +VK+MLP+D + K GPKKP PD++ V EPK+E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKI 220


>L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal protein
           S3/AP endonucleaseDNA repair protein protein.
          Length = 246

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 685
           +VK+MLP+D + K GPKKP PD++ V EPK+E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKI 220


>BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p
           protein.
          Length = 253

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 685
           +VK+MLP+D + K GPKKP PD++ V EPK+E +
Sbjct: 194 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKI 227


>AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p
           protein.
          Length = 246

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 685
           +VK+MLP+D + K GPKKP PD++ V EPK+E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKI 220


>AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA
           protein.
          Length = 246

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 685
           +VK+MLP+D + K GPKKP PD++ V EPK+E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKI 220


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,202,035
Number of Sequences: 53049
Number of extensions: 560453
Number of successful extensions: 1411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)