Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d08
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...    54   1e-07
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    31   1.0  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 20/38 (52%), Positives = 30/38 (78%)
 Frame = +2

Query: 584 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
           +VKIMLP+D +G+NGP+   PDH+ + EP++E +P EP
Sbjct: 187 KVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEP 224


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 437 TAKVKINIHSDHVRHVRYLLLCNVNSRVEKCMSLFTESIIQ 315
           T  + +    D+V H  +  +   ++R+EKC+ + TE I+Q
Sbjct: 726 TIVMSVGFSVDYVTHTTFHFVIQRDNRLEKCLLVMTEPILQ 766


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = -3

Query: 533 FFVFNVSHC-LFVFWCT-INTLSIGL---LKSQHIKRTAKVKINIHSDHVRHVRYLLLCN 369
           FF+F  S+  + +F  T  N ++ GL   ++  + KR +K++ N++SD+   VR  L  N
Sbjct: 165 FFIFGSSNREIHIFLITGFNLIAFGLTFVMERYNKKRYSKLRKNVNSDYSLSVRAQLSEN 224

Query: 368 VNS 360
           +NS
Sbjct: 225 INS 227


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 638  PQPDHILVTEPKDEPVPL 691
            P+P+ ++++EP  EPVP+
Sbjct: 1647 PEPEPVVISEPVPEPVPI 1664


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 638  PQPDHILVTEPKDEPVPL 691
            P+P+ ++++EP  EPVP+
Sbjct: 1647 PEPEPVVISEPVPEPVPI 1664


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
           protein R11A8.7d protein.
          Length = 1427

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 638 PQPDHILVTEPKDEPVPL 691
           P+P+ ++++EP  EPVP+
Sbjct: 468 PEPEPVVISEPVPEPVPI 485


>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
           protein R11A8.7c protein.
          Length = 1405

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 638 PQPDHILVTEPKDEPVPL 691
           P+P+ ++++EP  EPVP+
Sbjct: 468 PEPEPVVISEPVPEPVPI 485


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 638  PQPDHILVTEPKDEPVPL 691
            P+P+ ++++EP  EPVP+
Sbjct: 1647 PEPEPVVISEPVPEPVPI 1664


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 638  PQPDHILVTEPKDEPVPL 691
            P+P+ ++++EP  EPVP+
Sbjct: 1647 PEPEPVVISEPVPEPVPI 1664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,372
Number of Sequences: 27780
Number of extensions: 303077
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)