Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d08
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 530 FVFNVSHCLFVFWCTINTLSIGLLKSQH---IKRTAKVKINIHSDHVRHVRYLLLCNVNS 360
           +++ +S CL+ F  TIN +   L+  ++    K+T   K  I        R   +CN NS
Sbjct: 308 WLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSWVTRESQICN-NS 366

Query: 359 RVEK 348
             +K
Sbjct: 367 SSDK 370


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 204 NLKQNSYFYDGGRFNNQTSVKTSVENCLVCTVTEPIY 94
           N   N+Y Y+   +N +   K  + N     V  P+Y
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPVY 359


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 247 ILIFAYLLHMYISQIS 294
           IL+ AY+ H+Y+  +S
Sbjct: 120 ILLIAYIYHLYMGLLS 135


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -3

Query: 530 FVFNVSHCLFVFWCTINTLSIGLLKSQH 447
           +V+ ++ CL+ F  TIN +   ++ +++
Sbjct: 296 WVYPLTGCLYYFSTTINPILYNVMSAKY 323


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 192 NSYFYDGGRFNNQTSVKTSVENCLVCTVTEPIY 94
           N Y Y+   +N +   K  + N     V  P+Y
Sbjct: 102 NKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVY 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,107
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)