Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d06
(242 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.58
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 29 0.58
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 5.4
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084) 25 9.5
SB_37069| Best HMM Match : Ribosomal_S30 (HMM E-Value=8.5) 25 9.5
SB_12305| Best HMM Match : NAF1 (HMM E-Value=8) 25 9.5
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -3
Query: 210 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRH 31
+T+NT +S + SPVT I++ S N + ++FG + ++R+ G+
Sbjct: 144 VTYNTSSSSNVSTTRSPVTVARTITSQSS--------NRQRVCEIFGNTSGRSRRVRGKR 195
Query: 30 FEQSSCQN 7
+Q+S N
Sbjct: 196 VQQNSTNN 203
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 LFKMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH--WRRTKLKL 183
LF K + K + L + R IP R G +RY KRRH +++ K+K+
Sbjct: 596 LFGKKVRKPVRLLTKYCRLLFRGRKIPLRKGKRGGLVVRYRKKRRHLSFKQGKVKM 651
>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 171 CPSPVTPLSVISNSVSCAH 115
CPSP TP S SNS S A+
Sbjct: 40 CPSPTTPPSSRSNSSSSAY 58
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 28 KMSAHKTFIIKRKLAKKLKQNRPIP 102
KM+A + F +RK A K N P+P
Sbjct: 898 KMAADRLFKFRRKFASKPNANPPLP 922
>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 207 TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPL 103
T + F L P PV PL + S+ S H +P+
Sbjct: 126 TLDEFPRCTGPLVPRPVRPLMLASDQFSSLHMFPM 160
>SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 64 KLAKKLKQNRPIPQWVRMRTGNTIRYNAK 150
KLA K N P+++R+ N RYN +
Sbjct: 139 KLAHKPLYNNSFPEYLRLSVRNDTRYNLR 167
>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 100 PQWVRM-RTGNTIRYNAKRRHW 162
P+W+ R GN I Y+ RR W
Sbjct: 646 PEWLDFPRAGNNISYHYARRQW 667
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 61 RKLAKKLKQNR-PIPQWVRMRTGNTIRYNAKRRHWRRTKLK 180
+K+ K + Q R QWV T +RY+ +RHW K K
Sbjct: 2741 KKIYKIVTQGRHDANQWV---TSFKVRYSQNKRHWTWFKTK 2778
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -3
Query: 207 TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQF 64
T +T L + CP T + +N C P RNG + G F
Sbjct: 1142 TCSTNGKLAVCNCPGDFTGVHCETNKDECNEAMPCRNGGSCYNSIGFF 1189
>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
Length = 292
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 195 FTSLQLELCPSPVTPLSVISNSVSCAHPYPLRN 97
+ SL+ S V P +S VSC HP P R+
Sbjct: 56 YPSLRRSYRVSCVQPSPRLSYRVSCVHPSPRRS 88
>SB_37069| Best HMM Match : Ribosomal_S30 (HMM E-Value=8.5)
Length = 283
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 168 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFAL 58
P+P++ S S S S H P + + L+++FG L
Sbjct: 59 PAPISSHSRTSRSSSVCHTSPSQCYAQLYEIFGDSLL 95
>SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)
Length = 400
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 162 PVTPLSVISNSVSCAHPYPL 103
P P+S I S C+H YP+
Sbjct: 245 PAGPVSAILQSTVCSHRYPV 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,903,002
Number of Sequences: 59808
Number of extensions: 120100
Number of successful extensions: 348
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 58
effective length of database: 13,352,593
effective search space used: 293757046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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