Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d05
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   1.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   1.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   2.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   6.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   8.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 147 SSGESILTPGLVRTSSQHGPLSASESRPQT 58
           SSG S  T  + +  ++ G  +A E RP+T
Sbjct: 204 SSGRSPRTRRVKKPGAKQGAPTAEEKRPRT 233


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 84 SASESRPQTILRTRPPSS 31
          S +  RPQ IL+ RP +S
Sbjct: 42 STAVQRPQAILQVRPSTS 59


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 33  YSEVGYGGWFEVGTHW 80
           Y + G+ GW   G +W
Sbjct: 473 YFDCGFAGWVTDGNNW 488


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 135 SILTPGLVRTSSQHGPLSASESR 67
           S+  PG     S HGPL   + R
Sbjct: 143 SLQVPGAPMMMSSHGPLMYGQPR 165


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 101 LDVRTKPGVNMDSPEESG 154
           +D+  KP   +D  ++SG
Sbjct: 68  IDIEDKPAQKIDGEDDSG 85


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 137 SPEESGKCRLTKEGRTGPGGKPSSQKSP 220
           S EES    L+K G +  G + S +K P
Sbjct: 394 SQEESRVLDLSKPGCSYTGEQKSRRKGP 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,937
Number of Sequences: 336
Number of extensions: 1747
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)