Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d05
(338 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37015| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_41166| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 6e-07
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.059
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 31 0.24
SB_23186| Best HMM Match : Cornifin (HMM E-Value=1.3) 30 0.42
SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.96
SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021) 29 1.3
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_36247| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.2e-08) 29 1.3
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 28 1.7
SB_31367| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 27 3.9
SB_57969| Best HMM Match : zf-CCHC (HMM E-Value=0.0097) 27 5.1
SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4) 27 5.1
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 27 5.1
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_27397| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 9.0
SB_43449| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 26 9.0
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037) 26 9.0
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_13984| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_37015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/48 (58%), Positives = 28/48 (58%)
Frame = +2
Query: 95 C*LDVRTKPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG 238
C VR K GVNM EES RL KE RTGPG K S QK P VVG
Sbjct: 16 CRSGVRAKSGVNMVPYEESRVTRLVKEERTGPGWKHSRQKLPRSTVVG 63
>SB_41166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 49.6 bits (113), Expect = 6e-07
Identities = 27/48 (56%), Positives = 27/48 (56%)
Frame = +2
Query: 95 C*LDVRTKPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG 238
C VR K GVNM EES RL KE RTGPG K S QK P V G
Sbjct: 115 CRSGVRAKSGVNMVPREESRVTRLVKEERTGPGWKHSRQKLPRSTVAG 162
>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 33.1 bits (72), Expect = 0.059
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 177 PSLV--NLHFPDSSGESILTPGLVRTSSQHG-PLSASESRPQTILRTRPPSSRITGDATL 7
PSL+ ++ P S+ S+ P VRTSS+ P+ S RP PS R + + L
Sbjct: 471 PSLLRSSVEGPSSNKTSVEWPSSVRTSSERPLPVRTSAERPSLRTSAERPSLRTSAERPL 530
Query: 6 PV 1
PV
Sbjct: 531 PV 532
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 31.1 bits (67), Expect = 0.24
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 194 PLARFAPP*LTCTSQTPPGSPY*HQA*CGRPVNMGHSAPVSPDLKPSSVPDLRV 33
P+ R PP + + P + + G P +G VS D KPSS PD R+
Sbjct: 86 PVLRARPPLFSGNPRMKPHNMFVGHQPSGSPPAVGAKKAVSKDSKPSSSPDKRL 139
>SB_23186| Best HMM Match : Cornifin (HMM E-Value=1.3)
Length = 342
Score = 30.3 bits (65), Expect = 0.42
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 141 GESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATL 7
G SILT G + T ++ GP + +E P T+ P + G +TL
Sbjct: 16 GLSILTKGRLSTLTEGGPSTLTEGGPSTLTEGGPSTLTEGGPSTL 60
>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1558
Score = 29.1 bits (62), Expect = 0.96
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -3
Query: 180 RPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTR-PPSSRITGDA 13
+PS+++ D+ S+++PG R +Q + ASES + + R P SRIT +A
Sbjct: 1332 QPSVLSGRQSDTG--SVVSPGTARRLNQWAEIQASESIEMSSMSARMRPESRITQNA 1386
>SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)
Length = 397
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 4
P SS E LV+ S+ L PQ L T PP + T D P
Sbjct: 207 PTSSAEKRKKKRLVKQSTMSSMLKTPYINPQNKLNTLPPPNETTRDPVNP 256
>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 4
P SS E LV+ S+ L PQ L T PP + T D P
Sbjct: 944 PTSSAEKRKKKRLVKQSTMSSMLKTPYINPQNKLNTLPPPNETTRDPVNP 993
>SB_36247| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.2e-08)
Length = 290
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 95 C*LDVRTKPGVNMDSPEESGKCRLTKEGR 181
C VR K GVNM EES RL KE R
Sbjct: 16 CRSGVRAKSGVNMVPREESRVTRLVKEER 44
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 51 GGWFEVGTHWR*VAHVDWTSALSLVL 128
G + G HW+ A V WT L+LVL
Sbjct: 257 GSFLRPGKHWKNKAFVVWTLCLALVL 282
>SB_31367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +2
Query: 116 KPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG*RP 247
KPGV S E S + K GR GPGG S+ SP +V RP
Sbjct: 21 KPGVQSKS-EHSPQGPFGKSGREGPGG--SNSCSPGDPLVLERP 61
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 127 NTRLSADVQSTWATQRQ*VPTSNHPPYPTSE*PNYRRRHAPS 2
N + + +Q+ T+ + S+ P YPT++ RRH+P+
Sbjct: 572 NLHIPSPLQTPIDTEDSHIQASSPPLYPTTQRQGNMRRHSPT 613
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 137 SPEESGKCRLTKEGRTGPGGKP 202
SPEE + L ++G+ PGGKP
Sbjct: 1611 SPEEVREINLYQDGQMTPGGKP 1632
>SB_57969| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
Length = 410
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQ 97
PD SGES PG V+T+ Q
Sbjct: 2 PDESGESTSVPGFVQTNLQ 20
>SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)
Length = 523
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQ 97
PD SGES PG V+T+ Q
Sbjct: 2 PDESGESTSVPGFVQTNLQ 20
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQ 97
PD SGES PG V+T+ Q
Sbjct: 2 PDESGESTSVPGFVQTNLQ 20
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 26.2 bits (55), Expect = 6.8
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -3
Query: 195 PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 25
P + P +H P SS +I TP ++S+ H P S++ PQ+ P SS I
Sbjct: 493 PAMNLTPPSSTIHTPQSS--TIHTP---QSSTIHTPQSSTNPTPQSSTSPTPQSSTI 544
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = -3
Query: 186 PVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGD 16
P+ +++N HFP + + G V + + G + + +TI P S D
Sbjct: 542 PMLDNVINFHFPPKAKLFVHRVGRVARAGRSGTAYSLVANDETIFEVNPTSKTSARD 598
>SB_27397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 180 RPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
RP+ ++L FP SSG +LT L+ S +S+S
Sbjct: 48 RPANLSLSFPGSSGSVLLTNKLLGISLYDSYADSSQS 84
>SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 95 C*LDVRTKPGVNMDSPEESGKCRLTKEGR-TGPGGKPSSQK 214
C VR K GVNM EES RL + G+ G +P ++K
Sbjct: 6 CRSGVRAKSGVNMVPREESRVTRLGQVGKQAGLDLQPCAEK 46
>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQHGPLSASESRP 64
P SSG+ VRT+ H P + E RP
Sbjct: 4 PQSSGDQNEKLTHVRTNKNHSPAESHEERP 33
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 95 C*LDVRTKPGVNMDSPEESGKCRLTKEGR 181
C L + +K N D P E C+ T EG+
Sbjct: 395 CQLAMHSKKHTNADHPHECSTCQKTFEGK 423
>SB_43449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 131 MDSPEESGKCRLTKEGRTGPGGKPSSQKSPHR 226
MD E + +CR ++ + P G ++ SP R
Sbjct: 1 MDLLESNNQCRANQKDQLAPNGSVAANGSPRR 32
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 107 VRTKPGVNMDSPEESG-KCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
V+ PG N P G K R K GR GP G P + + + PG+ + P
Sbjct: 132 VQGPPG-NQGPPGPKGDKGRPGKRGRRGPAGPPGQPGADGKQGIRGPPGIKGERGP 186
>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
Length = 1235
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 159 HFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITG 19
H DSS + +L P T S H P +A + ++ P+S G
Sbjct: 428 HPADSSLQHLLYPEPADTQSFHSPSAADVTLESVLIEVGTPTSEAHG 474
>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 25.8 bits (54), Expect = 9.0
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = -3
Query: 252 TPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASE 73
TPG PTT+ GD G VR + ++ P G ++LTP + S ++
Sbjct: 371 TPGDSPTTSLAGD--TADSNHGKVRRFVTSM--PSGRG-TVLTP-KPQDSLPSSRVTTDS 424
Query: 72 SRPQTILRTRPPSSRITGDATL 7
++P T P S+ +G+++L
Sbjct: 425 AKPPTPAPDTPTSTPRSGESSL 446
>SB_13984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 153 PDSSGESILTPGLVRTSSQHGPLSASESRP 64
P SSG+ VRT+ H P + E RP
Sbjct: 10 PQSSGDQDEKLTHVRTNKNHSPAESHEERP 39
>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 95 C*LDVRTKPGVNMDSPEESGKCRLTKEGR 181
C L + +K N D P E C+ T EG+
Sbjct: 327 CQLAMHSKKHTNADHPHECSTCQKTFEGK 355
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,514
Number of Sequences: 59808
Number of extensions: 227159
Number of successful extensions: 693
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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