Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d05
         (338 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119444-1|AAM50098.1| 1133|Drosophila melanogaster AT03104p pro...    29   1.2  
AY061587-1|AAL29135.1|  842|Drosophila melanogaster SD03976p pro...    29   1.2  
AF001796-1|AAB63271.1|  959|Drosophila melanogaster putative Kru...    29   1.2  
AE014297-3436|AAN13968.1| 1175|Drosophila melanogaster CG5405-PB...    29   1.2  
AE014297-3435|AAF56220.3| 1175|Drosophila melanogaster CG5405-PA...    29   1.2  
AE014297-3434|AAN13970.2| 1133|Drosophila melanogaster CG5405-PC...    29   1.2  
BT029946-1|ABM92820.1|  637|Drosophila melanogaster IP16971p pro...    29   2.0  
AE013599-669|AAF59074.1|  417|Drosophila melanogaster CG14747-PA...    29   2.0  
AE014296-2897|AAF49349.4|  926|Drosophila melanogaster CG13731-P...    28   2.7  
AY122120-1|AAM52632.1|  602|Drosophila melanogaster GH19816p pro...    28   3.6  
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro...    27   6.2  
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio...    27   6.2  
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.    27   6.2  
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA...    27   6.2  
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD...    27   6.2  
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB...    27   6.2  
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC...    27   6.2  

>AY119444-1|AAM50098.1| 1133|Drosophila melanogaster AT03104p protein.
          Length = 1133

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 195  PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
            PP    PS  + H   ++ ES+ TP  V+  S  G L+A+E+
Sbjct: 934  PPLQTPPSSASSHRERNTSESLSTPSSVQQQSFSGALAAAEA 975


>AY061587-1|AAL29135.1|  842|Drosophila melanogaster SD03976p
           protein.
          Length = 842

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 195 PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
           PP    PS  + H   ++ ES+ TP  V+  S  G L+A+E+
Sbjct: 643 PPLQTPPSSASSHRERNTSESLSTPSSVQQQSFSGALAAAEA 684


>AF001796-1|AAB63271.1|  959|Drosophila melanogaster putative
           Krueppel target geneprotein protein.
          Length = 959

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 195 PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
           PP    PS  + H   ++ ES+ TP  V+  S  G L+A+E+
Sbjct: 745 PPLQTPPSSASSHRERNTSESLSTPSSVQQQSFSGALAAAEA 786


>AE014297-3436|AAN13968.1| 1175|Drosophila melanogaster CG5405-PB,
            isoform B protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 195  PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
            PP    PS  + H   ++ ES+ TP  V+  S  G L+A+E+
Sbjct: 976  PPLQTPPSSASSHRERNTSESLSTPSSVQQQSFSGALAAAEA 1017


>AE014297-3435|AAF56220.3| 1175|Drosophila melanogaster CG5405-PA,
            isoform A protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 195  PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
            PP    PS  + H   ++ ES+ TP  V+  S  G L+A+E+
Sbjct: 976  PPLQTPPSSASSHRERNTSESLSTPSSVQQQSFSGALAAAEA 1017


>AE014297-3434|AAN13970.2| 1133|Drosophila melanogaster CG5405-PC,
            isoform C protein.
          Length = 1133

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 195  PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 70
            PP    PS  + H   ++ ES+ TP  V+  S  G L+A+E+
Sbjct: 934  PPLQTPPSSASSHRERNTSESLSTPSSVQQQSFSGALAAAEA 975


>BT029946-1|ABM92820.1|  637|Drosophila melanogaster IP16971p
           protein.
          Length = 637

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 198 FPPGPVRPSLVNLHFPDSSGESILTPGL-VRTSSQHGPLSASESRPQTILRTRPPS 34
           +PPGP RP+     +P    E    P    R S  + P    E RP    R  PPS
Sbjct: 322 YPPGPPRPTADRPEYPPRPYEGSTPPSYGPRPSPSYDP--DREPRPDYTNRPDPPS 375


>AE013599-669|AAF59074.1|  417|Drosophila melanogaster CG14747-PA
           protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 198 FPPGPVRPSLVNLHFPDSSGESILTPGL-VRTSSQHGPLSASESRPQTILRTRPPS 34
           +PPGP RP+     +P    E    P    R S  + P    E RP    R  PPS
Sbjct: 269 YPPGPPRPTADRPEYPPRPYEGSTPPSYGPRPSPSYDP--DREPRPDYTNRPDPPS 322


>AE014296-2897|AAF49349.4|  926|Drosophila melanogaster CG13731-PA
           protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -3

Query: 195 PPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPP 37
           PP P RP       P     + L P  VRT+    P +   +RP T   TRPP
Sbjct: 531 PPPPTRP-------PTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTPPPTRPP 576


>AY122120-1|AAM52632.1|  602|Drosophila melanogaster GH19816p
           protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 183 VRPSLVNLHFPD-SSGESILTPGLVRTSSQHGPLSASESRPQTI 55
           +RP ++  HFP    G +I TP LV  +S   PLS +  RP  +
Sbjct: 465 IRPGVLESHFPVLGGGSAIETPALVAPASP-SPLS-NGKRPDVV 506


>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
           protein.
          Length = 1153

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167 TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
           T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 339 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 372


>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
            corepressor Atro protein.
          Length = 1985

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167  TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
            T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 1171 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 1204


>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
          Length = 1966

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167  TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
            T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 1171 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 1204


>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
            isoform A protein.
          Length = 1966

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167  TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
            T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 1171 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 1204


>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
            isoform D protein.
          Length = 1985

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167  TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
            T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 1171 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 1204


>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
            isoform B protein.
          Length = 1985

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167  TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
            T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 1171 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 1204


>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
            isoform C protein.
          Length = 1988

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167  TKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 271
            T  G +GPGG P  Q+SPH       PG+     P
Sbjct: 1171 TMAGSSGPGG-PPPQQSPHAHRTSPLPGLAGSGPP 1204


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,196
Number of Sequences: 53049
Number of extensions: 358893
Number of successful extensions: 1363
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)