Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d05
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125972-1|AAD14770.2|  349|Caenorhabditis elegans Hypothetical ...    31   0.28 
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    29   1.1  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    29   1.1  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    29   1.1  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    28   1.5  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    28   1.5  
AC006776-2|AAF60627.1|  172|Caenorhabditis elegans Hypothetical ...    27   2.6  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    27   3.4  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    27   3.4  
U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protei...    23   4.2  
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z66566-2|CAA91485.1|  537|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z66566-1|CAA91484.1|  515|Caenorhabditis elegans Hypothetical pr...    27   4.5  
X60233-1|CAA42793.1|  537|Caenorhabditis elegans LIN-14A protein.      27   4.5  
X60232-1|CAA42792.1|  515|Caenorhabditis elegans LIN-14B2 protein.     27   4.5  
X60231-1|CAA42791.1|  539|Caenorhabditis elegans LIN-14B1 protein.     27   4.5  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    27   4.5  
U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protei...    26   6.0  
AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    26   7.9  

>AF125972-1|AAD14770.2|  349|Caenorhabditis elegans Hypothetical
           protein H25P19.1 protein.
          Length = 349

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 192 PGPVRPSLVNLHFPDSSGE-SILTPGLVRTSSQHGPLSASESRPQTILRTRP 40
           P P RP  +NL F  +  +    TPG+   SS   P S  +S P+T   T P
Sbjct: 266 PEPSRPPRINLKFRFTPSKLGTATPGISIISSPTPPKSPPKSTPRTSKSTPP 317


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 116 KPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 259
           KP V    P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 133 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 180


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 116 KPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 259
           KP V    P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 116 KPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 259
           KP V    P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
            protein 8 protein.
          Length = 1206

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 204  LGFPPGPVRPSLVNLHFPDSS--GESILTPGLVRTSSQHGPLSASESRPQTILRTRP 40
            LGF  GPV  ++V L+ P     G+++     + ++S+ G    SE+    +L+  P
Sbjct: 1078 LGFHTGPVAAAVVGLNAPRYCLFGDTVNMASRMESNSEPGKTQISETAKNLLLKEYP 1134


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1152

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 204  LGFPPGPVRPSLVNLHFPDSS--GESILTPGLVRTSSQHGPLSASESRPQTILRTRP 40
            LGF  GPV  ++V L+ P     G+++     + ++S+ G    SE+    +L+  P
Sbjct: 1024 LGFHTGPVAAAVVGLNAPRYCLFGDTVNMASRMESNSEPGKTQISETAKNLLLKEYP 1080


>AC006776-2|AAF60627.1|  172|Caenorhabditis elegans Hypothetical
           protein Y46H3C.5 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 134 DSPEESGKCRLTKEGRTGPGGKPSSQK 214
           D  +E G CR  ++ RT   G P +QK
Sbjct: 30  DQVDEGGSCRKDRDERTMERGNPETQK 56


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +2

Query: 116 KPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 259
           KP      P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 135 KPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +2

Query: 116 KPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 259
           KP      P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 135 KPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182


>U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protein
           173 protein.
          Length = 325

 Score = 23.0 bits (47), Expect(2) = 4.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 173 EGRTGPGGKPSSQKSP 220
           EG  GP G P  +KSP
Sbjct: 234 EGEGGPDGIPMEKKSP 249



 Score = 22.2 bits (45), Expect(2) = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 119 PGVNMDSPEESGKCRLTKEGRTGPGG 196
           PG+  +  E++G  R    G TGP G
Sbjct: 198 PGIPGNQGEDAGPGRQGMPGPTGPPG 223


>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical protein
            F22E10.1 protein.
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 198  FPPGPVRPSLVNLHFPDSSGESILTPG 118
            +P  P++P + +LHF   SG+++   G
Sbjct: 1086 YPQRPMQPVMTDLHFSAHSGQTVALVG 1112


>Z66566-2|CAA91485.1|  537|Caenorhabditis elegans Hypothetical
           protein T25C12.1b protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 210 WLLGFPPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 58
           W++G    P  P+L N   P + GE+ L     +T    GP S   +  +T
Sbjct: 149 WIMGSSLKPASPTLPNGQIPTTIGETSLQGTDDQTVKWIGPSSVDSNGQKT 199


>Z66566-1|CAA91484.1|  515|Caenorhabditis elegans Hypothetical
           protein T25C12.1a protein.
          Length = 515

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 210 WLLGFPPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 58
           W++G    P  P+L N   P + GE+ L     +T    GP S   +  +T
Sbjct: 127 WIMGSSLKPASPTLPNGQIPTTIGETSLQGTDDQTVKWIGPSSVDSNGQKT 177


>X60233-1|CAA42793.1|  537|Caenorhabditis elegans LIN-14A protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 210 WLLGFPPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 58
           W++G    P  P+L N   P + GE+ L     +T    GP S   +  +T
Sbjct: 149 WIMGSSLKPASPTLPNGQIPTTIGETSLQGTDDQTVKWIGPSSVDSNGQKT 199


>X60232-1|CAA42792.1|  515|Caenorhabditis elegans LIN-14B2 protein.
          Length = 515

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 210 WLLGFPPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 58
           W++G    P  P+L N   P + GE+ L     +T    GP S   +  +T
Sbjct: 127 WIMGSSLKPASPTLPNGQIPTTIGETSLQGTDDQTVKWIGPSSVDSNGQKT 177


>X60231-1|CAA42791.1|  539|Caenorhabditis elegans LIN-14B1 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 210 WLLGFPPGPVRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 58
           W++G    P  P+L N   P + GE+ L     +T    GP S   +  +T
Sbjct: 151 WIMGSSLKPASPTLPNGQIPTTIGETSLQGTDDQTVKWIGPSSVDSNGQKT 201


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 108 TSSQHGPLSASESRPQTILRTRPPS 34
           TSS+H P+   E R + + R+ PP+
Sbjct: 643 TSSRHSPVPRREDRAEFMARSTPPA 667


>U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protein
           175 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 104 DVRTKPGVNMDSPEESGKCRLTKEGRTGPGGKPSSQKSP 220
           DV+   G+N+ +   S  C+        P G P  +  P
Sbjct: 72  DVKKLMGINLRNKRNSDSCQCESRAAACPAGSPGEKGEP 110


>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 119 PGVNMDSPEESGKCRLTKEGRTGPGGKPSS 208
           P +NMD+ ++   C     G  GP G P +
Sbjct: 123 PSINMDAHQQCRMCPPGAPGFPGPAGPPGA 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,629,027
Number of Sequences: 27780
Number of extensions: 166638
Number of successful extensions: 628
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)