Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d03
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4) 37 0.015
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 31 0.76
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48) 31 1.3
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 30 2.3
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5) 30 2.3
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3) 29 3.1
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 29 3.1
SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023) 29 3.1
SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 29 4.1
SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06) 29 4.1
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 5.4
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.4
SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 28 7.1
SB_156| Best HMM Match : MORN (HMM E-Value=5.9e-18) 28 9.4
>SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 589
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +1
Query: 247 IRSVTRKNNDLRDRIKSKV-DEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVL 423
++ ++ + D IK V DE+ Q ++ S+ ID N+Q+ + + C G+++
Sbjct: 42 LKLISELEKYISDAIKDDVSDEELQQHKKNASEHIDPESQNLQFKCQSEHEILCMWGNIV 101
Query: 424 KSKFAKILK--SHDYT 465
K+ K +K SHD++
Sbjct: 102 KNPRLKCVKFDSHDFS 117
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 382 DEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQL 513
D H+S++CQ+ + + +K HD+ S+ T ++C P L
Sbjct: 9 DRHHSLTCQSNAEVITKSYPGPSIHDFVTNTSLATIMQHCAPLL 52
>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 601 YNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKI 741
++ + +V F H I G+Y Y L D + + +QF E V+K+
Sbjct: 644 HSAVAETAVVGFPHPIKGEGIYAYATLK--DDAQIEPEQFREEVKKL 688
>SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)
Length = 334
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 271 NDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 411
N R+ +K KV + LEREY D + F+D + +D H ++ Q+
Sbjct: 231 NLARESLKLKVRDSTLWLEREYMDSFERFNDKLPAKEDFHSTMYDQH 277
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 235 ISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 390
+S P S +N R+KS ++ D L+ ++S +D HD I+ K+E+
Sbjct: 776 VSAPSTSSDLNSNQ---RVKS-LENSLDFLQAQHSQVLDNLHDEIERLKEEN 823
>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
Length = 246
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 619 KVIVPFAHEINDTGLYEYDVLA--YVDSVEFDGKQFEEFV 732
K+ + F+H+ GL ++++ Y + VEF+ KQFEEFV
Sbjct: 184 KMAIVFSHQF---GLRGFNIIMDEYENRVEFEYKQFEEFV 220
>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
Length = 719
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 514 VDKHNDCYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVP 633
++K C V V +L PGF+ S +E+ K I+P
Sbjct: 268 LEKIKACSVFVPILTPGFQESSKHQQEYEFARANQKQIIP 307
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 215 GFVNCVFIILLMYTNSLVCSST*QSRITVWD 123
G VNCV+ I L+CS + S + VWD
Sbjct: 99 GHVNCVYQIAWSADCRLICSGSADSTLKVWD 129
>SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023)
Length = 1901
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +1
Query: 247 IRSVTRKNNDLRDRIKSKVDEQFD--QLEREYSDKIDGFHDNIQ-YFKDEHYSVS 402
+RS+ RKN +L +R S +DE + QLERE ++ D ++ FK ++V+
Sbjct: 1843 LRSIDRKNEELSER-NSVIDETLEENQLERENLEERMSLKDRVKAIFKKYGFTVA 1896
>SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 247 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 390
IRS K D D+ + + +++ D+ + Y D + D+++ + H
Sbjct: 561 IRSALTKERDSMDKERERFNQKLDETRQHYEDVLRQLRDDLEEERQGH 608
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +1
Query: 208 TKPVLMMFNISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 387
T P + N S +RS+ RKN +L +K K+DE+ QL ++ + ++ + +D+
Sbjct: 375 TSPKMDRTNGSQELRSLQRKNVELSSLVK-KLDEKNQQLATRNAELMSELENSNKEHRDK 433
Query: 388 HYSVSCQN 411
+ + +N
Sbjct: 434 NKRLEKKN 441
>SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06)
Length = 155
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +1
Query: 463 TDKKSIETYEKYCLPQLVDKHNDCYVAV----CVLKPGFENGSN 582
T KK Y+ C P L H DC + C PGFE G N
Sbjct: 41 TKKKKALCYKASCQPLLCGLHGDCVEVIQSYKCECHPGFE-GDN 83
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 253 SVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI 348
SVT++NN++++R+K +E+ + E DK+
Sbjct: 199 SVTQRNNEIQERLKQLEEEEEARKRAELEDKM 230
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 316 DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEK 495
D L+R++ HD I H + C+ G +S+ +K+H KS K
Sbjct: 1472 DNLQRKFIGSKLQSHDRINV--KPHQCIVCRKGFTARSRLLHHVKAHHNMKTKSNIFTCK 1529
Query: 496 YCLPQLVDKHND 531
YC + + H+D
Sbjct: 1530 YC-GRAITNHSD 1540
>SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = -1
Query: 282 AQIVVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGHVDFYRK 103
+ ++++ S+ T + K E+ L+ N +V G + H+T+ N+ H+ +
Sbjct: 143 SHVIIIKGRYSHVTMS-KGRESHVTMLKGRNS-HVTMRKGRYSHVTMMKNKDNHLTMRKG 200
Query: 102 NYTHFAMVK 76
Y+H M+K
Sbjct: 201 RYSHVTMMK 209
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 316 DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTD--KKSIETY 489
D+ RE+S+++ DN+ FK+E S C N + +S I K + T+ +K ++
Sbjct: 428 DKFRREFSERVGEVIDNLSEFKEESTSF-CSN--ISQSIGMLISKKSEETNDLQKQMDRM 484
Query: 490 EKYCLPQLVDKHNDCYV 540
L ++V+ N+ V
Sbjct: 485 ANDLLERMVEISNNAKV 501
>SB_156| Best HMM Match : MORN (HMM E-Value=5.9e-18)
Length = 653
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 592 SFEYNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKI 741
S + +G+K + HE++ G Y + D V G++ E F+ I
Sbjct: 343 SISFAVLGSKAVNGRVHELSYLGYYTAQAAGHDDMVNGKGRKIESFMSLI 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,308,988
Number of Sequences: 59808
Number of extensions: 473382
Number of successful extensions: 1433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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