Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3d01
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 1.4
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 25 1.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 1.9
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 3.2
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 24 3.2
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 4.3
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 23 5.7
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 23 7.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 23 7.5
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 23 9.9
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 23 9.9
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 135 FCVTKQFFSTISFAFIGAITTLSYPKIKAKNK*NDVQ 25
FC+ +QF I I + TL I +KN+ ++Q
Sbjct: 293 FCLVRQFDPCIRLLSISCLVTLYKAGILSKNQTKEIQ 329
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 1.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 53 LIFG*LSVVMAPINANDIVEKNCLVTQKVLPEIGSDCNG 169
+IFG +++ A INAN+ ++ LV ++ P NG
Sbjct: 42 IIFGVYAIIQARINANN--DETPLVYEEPAPPFSGQSNG 78
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.0 bits (52), Expect = 1.9
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -1
Query: 181 SFFISITIRSDFRQHLLRDQTIFLHDIVRVYRCHYHT*LS 62
S + + +++ QH+L +Q ++ D++ HY +S
Sbjct: 208 SMYAAEDVKTLIHQHILVNQRVYAEDVIEPKTFHYKNGIS 247
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 126 TKQFFSTISFAFIGAITTLSYPKIK 52
T+ T FA + A TTL P+IK
Sbjct: 1060 TQMTLKTFHFAGVAAQTTLGVPRIK 1084
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 24.2 bits (50), Expect = 3.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 10 LRHRALNIVLFIFRFNFWITKCGNGTYK 93
L HR ++ +L+I F ++ G YK
Sbjct: 147 LHHRFISFMLYIIGFVLFVASLKKGNYK 174
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 23.8 bits (49), Expect = 4.3
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 68 LSVVMAPINANDIVEKNCLVTQKVLPEIGS---DCNGNEK 178
LSV+ + + D ++++C+VT + P + S D N EK
Sbjct: 731 LSVIYSAYQSFDDIDRDCIVTPLLRPYLMSNLCDINSLEK 770
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 5.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 37 LFIFRFNFWITKCGNGTYKRERYRGEKLFGHAEG 138
L IF F I C T RG+ ++GH +G
Sbjct: 356 LIIFCQEFVIPACERLTVLLSSARGKSIWGHMKG 389
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 206 DEKLNKRTQFFHFHYNQIRFPAAP 135
D KR F F N+ RF +AP
Sbjct: 13 DATFGKRPSSFEFIVNKTRFSSAP 36
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 55 NFWITKCGNGTYKRERY 105
+FW++K GTY R Y
Sbjct: 557 SFWVSKVFKGTYYRLSY 573
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 186 NPVFSFPLQSDPISGSTFCVTKQF 115
NP F + + SDP S C T+++
Sbjct: 5 NPPFPYSMTSDPESFGHECFTRRW 28
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 186 NPVFSFPLQSDPISGSTFCVTKQFFSTIS 100
NPV + PI+G F Q+ + +S
Sbjct: 313 NPVACYAFSKSPINGFCFSPDYQYLALVS 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,488
Number of Sequences: 5004
Number of extensions: 18901
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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