Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d01
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    29   0.39 
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316...    26   4.7  
02_01_0291 - 1947841-1948896                                           25   8.3  

>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 67  TKCGNGTYKRERYRG-EKLFGHAEGAAGNRI 156
           ++CG   Y R+  RG + LFGHA+G    RI
Sbjct: 139 SRCGGRDYWRQFMRGLDYLFGHADGYGERRI 169


>03_06_0656 -
           35330109-35331011,35331154-35331360,35331455-35331632,
           35331726-35332221,35332889-35333033
          Length = 642

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 76  GNGTYKRERYRGEKLFGHAEGAAGN 150
           GNG Y++  YRG+  +    G +GN
Sbjct: 466 GNGGYRQGGYRGDGGYQQGRGYSGN 490


>02_01_0291 - 1947841-1948896
          Length = 351

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 55  NFWITKCGNGTYKRERYRGE 114
           + WI+K G GTY+    RGE
Sbjct: 190 DIWISKQGVGTYRFHTERGE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,189,055
Number of Sequences: 37544
Number of extensions: 108111
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)