Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3d01
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)                       29   0.44 
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               27   3.1  
SB_38967| Best HMM Match : Entericidin (HMM E-Value=0.81)              25   7.2  
SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)                      25   7.2  
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)                 25   9.5  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
          Length = 1313

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -3

Query: 170 FHYNQIRFPAAPSA*PNNFSPRYRSRL*-----VPLPHLVIQKLKRKINRTMFSA 21
           + YN+++    P++ P+   P Y S +      VP PH  +QK+ R ++RT  SA
Sbjct: 651 YGYNEVK----PASFPSEVIPEYHSSVRLYINPVPTPHGKVQKMLRLLHRTAVSA 701


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 178 FFISITIRSDFRQHLLRDQTIFLHDIVRVYRCHY 77
           +F+S+ + S  R H+L D     +D +++ R H+
Sbjct: 21  YFLSVIVTSQVRSHVLED---MYYDRLKILRAHF 51


>SB_38967| Best HMM Match : Entericidin (HMM E-Value=0.81)
          Length = 189

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 19 RALNIVLFIFRFNFWITKCGNGTYKRE 99
          R +NI + +   N ++  CG G  K+E
Sbjct: 2  RKINIAILLLFVNLFLISCGGGISKQE 28


>SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)
          Length = 562

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 170 FHYNQIRFPAAPSA*PNNFSPRYRSRL*VPLPHLVIQKLKRKINRTMFS 24
           F  NQ++F     + P N + R R    + +  L +Q+ + K+++T  S
Sbjct: 66  FLTNQLQFNIGAPSSPENLATRIRKPKPIVIEKLGVQENENKLHQTFVS 114


>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
          Length = 669

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 19  RALNIVLFIFRFNFWITKCGNGTYKRE 99
           + +  +LF F F FW +K  +G Y  +
Sbjct: 78  QCMKYLLFAFNFVFWCSKIISGIYSSQ 104


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 28  NIVLFIFRFNFWITKCGNGTYKR 96
           NIV FI R + WI     G  KR
Sbjct: 174 NIVAFIHRNDIWIVNISTGEEKR 196


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 114  KIVWSRRRCCRKSDLI 161
            K+ W  RRCCR S  +
Sbjct: 2067 KVRWGTRRCCRMSPFL 2082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,326,643
Number of Sequences: 59808
Number of extensions: 126522
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)