Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c24
(344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 118 2e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 117 4e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 25 2.5
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 3.3
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 25 4.4
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 24 5.8
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 24 7.6
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 7.6
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 7.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 24 7.6
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 118 bits (285), Expect = 2e-28
Identities = 52/84 (61%), Positives = 59/84 (70%)
Frame = +3
Query: 33 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSXCAQCGYPAAKLRSYHWSVKAXXXXXXX 212
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 213 XXXMRHLKIVRRRFRNGFXEGKPT 284
M +LK V R F+NGF GKPT
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 117 bits (282), Expect = 4e-28
Identities = 53/91 (58%), Positives = 60/91 (65%)
Frame = +3
Query: 33 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSXCAQCGYPAAKLRSYHWSVKAXXXXXXX 212
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 213 XXXMRHLKIVRRRFRNGFXEGKPTPPKKAVA 305
M +LK V R F+NGF GKP A A
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 2.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 241 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYP 143
T+F + +PV+ + FT+ W N A +P
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFP 229
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 3.3
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +3
Query: 69 NKTHTLCRRCGRSSYHIQKSXCAQCGYP 152
N H C C Y + S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 139 WAHXDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 32
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 303 LQPSWAALVSLLXNHYGSAS*QSSN 229
L+ S+A+L+S + NH +S SSN
Sbjct: 330 LEKSYASLLSKVANHTAKSSEDSSN 354
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 4 ISFGLSRVTR*RRVPQASVSAEIRPIRYAEDVVDRHITF 120
+ G S+ + +PQ S+ + Y ED++D +++F
Sbjct: 691 VKIGNSQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSF 729
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 7.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +2
Query: 137 PMWISCSKITILPLVSEG*AQEDYW 211
P W+SC+++ +L + +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 39 KGTSSFGKRRNKTHTLCRRCGRSS 110
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.8 bits (49), Expect = 7.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 25 VTR*RRVPQASVSAEIRPIRYAEDVVDRHITFKNXNAPNVDILQQNYD 168
+TR +PQ S RP+ E +VD IT N N V D
Sbjct: 337 LTRPIEIPQ-HFSPIARPLTSQEAIVDMDITSNNINLSPVSHFSNGLD 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,770
Number of Sequences: 5004
Number of extensions: 23714
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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