Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c24
         (344 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   5.6  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    22   7.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    21   9.7  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 108  TIYHIFCITYGSYFGAYRSLRYPSSSCHS 22
            TI   + I Y    G   SLRYP  S  S
Sbjct: 2062 TINRTYSIDYEYENGKLHSLRYPMDSAAS 2090


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 299 SLLGRRWFPFXKTITEAP 246
           S  G+ W+   K I EAP
Sbjct: 251 SFTGKMWYQVYKQIREAP 268


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +3

Query: 69  NKTHTLCRRCGRSSYHIQKSXCAQCGYPAAKLRS 170
           N+    C RC  + +  +   C  CG      RS
Sbjct: 373 NRDGPNCERCKENFFMREDGYCINCGCDPVGSRS 406


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,842
Number of Sequences: 2352
Number of extensions: 5658
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24505155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)