Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c21
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.49 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.49 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    29   0.65 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    28   1.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   3.5  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   4.6  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    26   6.0  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   6.0  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   6.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   8.0  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 243  AFIHXRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 422
            AF H  F  ++ +  N +E      N   +   P+L T+    L   +D P ++++  + 
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437

Query: 423  FDTEALVNF 449
             +T  ++NF
Sbjct: 1438 ENTPLILNF 1446


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = -3

Query: 457 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 284
           S S  +++SV +    I +  GLS ++ +  +  +  +G+P   +S VSVT N  ++   
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236

Query: 283 KLVTSGW---NLXCIKANVLN 230
            + T+GW   N  C+   V N
Sbjct: 237 TVNTNGWTSSNFKCVDDVVAN 257


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 474 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 593
           IAK  G+SKRK+    + YE++K P    DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 435 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 581
           +L NF++DNC ++   +   S R N   S+   S      D+DL  +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
 Frame = -3

Query: 457 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 284
           S S  + +S S+S  S+      S+ H+S+ S S +   S  P    S ++  ++S  + 
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251

Query: 283 KL-VTSGWNLXCIKANVLNTTAAICRXSALFLNIS--NSGWVISRVLS-IAMYXLSANLI 116
            + VT   +     + V ++TAA+   ++   N +  N+G ++  V+  +A   + A  I
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALCI 311

Query: 115 F 113
           F
Sbjct: 312 F 312


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 335 GNACVISFSDHKLHFVSKISNK 270
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 552 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 653
           YD D+S FS+  + A + + L L  E  Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 186 IFRNKADXRQIAAVVFSTLAFIHXRFHPLV---TNFTNKMEFVVTETNDTS 329
           IFR   + R    V     AFI  ++ PLV   T++TN     V +TN  S
Sbjct: 93  IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +3

Query: 417 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 578
           R+  TE      + N  V++AK      +F   K+KNTT S   ES+     D    D S
Sbjct: 6   RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64

Query: 579 ITEVE 593
           + E E
Sbjct: 65  LNESE 69


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 338 SGNACVISFSDHKLHFVSKISNKW 267
           SGN   +S  D+K++   +  NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 481  LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 365
            L I+  QLSFS+    S + SRL  +T+   +     TP
Sbjct: 889  LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +3

Query: 177 LLEIFRNKADXRQIAAVVFSTLAFIHXRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFT 356
           +LEI     D  +  ++VFST      R++ LV   ++     + E  D       IL  
Sbjct: 292 ILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEK 351

Query: 357 ENE 365
            N+
Sbjct: 352 RND 354


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 441 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 602
           ++ E++  +V      G++KRK      N ++    E+N++P  D+ LSD    +    +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185

Query: 603 YLTLLLI-VEHAYLHYY 650
            L L+ + ++H  ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,702
Number of Sequences: 5004
Number of extensions: 48951
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)