Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c18
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   152   5e-38
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    33   0.040
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.49 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   0.86 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    28   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.6  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    27   3.5  
SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit...    27   3.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.0  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.0  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  152 bits (368), Expect = 5e-38
 Identities = 78/202 (38%), Positives = 122/202 (60%), Gaps = 3/202 (1%)
 Frame = +1

Query: 106 KFDLTXKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEIXSKXNMIDYVTDIRRML- 282
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++    NM DYV ++   L 
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73

Query: 283 --YPEEDTPEEIIQRRGVVLSELQELQDAXEPVLRLMQRDDVMKTIETMRDPKTLINHLS 456
             + +ED      ++R  VL EL EL++  + +L +++  D++  +   +D    + HL 
Sbjct: 74  GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130

Query: 457 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASE 636
             + Y    E I  +Y+ A+++Y CGNY  ++  LY  +      + N  S  WGK ASE
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASE 188

Query: 637 ILVQNWDGALDDLTKLREFIDN 702
           IL  +WDGA+++L KLRE +D+
Sbjct: 189 ILTVDWDGAMEELGKLREMVDS 210


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -2

Query: 606 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRI 427
           Q++ V W+HHQ       C   I + F  IFGQ I AID ++ KL  +  +    +SF  
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384

Query: 426 P 424
           P
Sbjct: 385 P 385


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +1

Query: 409 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 540
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 531 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 370
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 220 KLEIXSKXNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAXEPVLRLMQRDD 399
           K+ + S  N I Y +    +L      P+E ++ RG+ +   Q  +++ E VL+      
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247

Query: 400 VMK 408
           V K
Sbjct: 248 VCK 250


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 394  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 516
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 127  IGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEIXSK 240
            I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1220 ISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 661 RHPNFVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 551
           R   FVP    P  P K P      L  +P+DK +DMM
Sbjct: 162 RTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199


>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
           Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 625 LASEILVQNWDGALDDLTKLREFID 699
           LA++I  QN  G LD+L+ LR+F D
Sbjct: 111 LANKIDDQNLQGILDELSTLRKFQD 135


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 367  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 486
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 595 CQLATSPVDKSKDMMLTPHNFHIHSDIW 512
           C++    V KS D+ +  H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,201
Number of Sequences: 5004
Number of extensions: 52143
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)