Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c18
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679...   165   2e-41
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362...   125   4e-29
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012...   115   4e-26
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    28   6.3  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     28   8.3  

>07_01_0836 -
           6795224-6795263,6796027-6796128,6796264-6796401,
           6796790-6796932,6797388-6797607,6798087-6798208,
           6798317-6798544,6798993-6799355
          Length = 451

 Score =  165 bits (402), Expect = 2e-41
 Identities = 77/200 (38%), Positives = 134/200 (67%)
 Frame = +1

Query: 103 SKFDLTXKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEIXSKXNMIDYVTDIRRML 282
           ++ DLT ++   +D HLVFPLLEFL  +  Y   E+L+AKL + S  NM+DY  DI + L
Sbjct: 2   AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61

Query: 283 YPEEDTPEEIIQRRGVVLSELQELQDAXEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 462
           +  ++ P+++++RR  V+S L+ L +A  P++  +Q   +   ++ +R  K    H+  +
Sbjct: 62  HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHMLQD 118

Query: 463 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 642
           + ++   E I+++Y+ AK++++CGNY ++A YLY  + + + ++++ LS LWGKLA+EIL
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERS-LSALWGKLAAEIL 176

Query: 643 VQNWDGALDDLTKLREFIDN 702
           +QNWD ALD+L +L+E ID+
Sbjct: 177 MQNWDVALDELNRLKEIIDS 196


>07_01_0482 +
           3627980-3628270,3628785-3629012,3629116-3629237,
           3629747-3629966,3630434-3630576,3631004-3631141,
           3631275-3631380
          Length = 415

 Score =  125 bits (301), Expect = 4e-29
 Identities = 72/200 (36%), Positives = 117/200 (58%)
 Frame = +1

Query: 103 SKFDLTXKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEIXSKXNMIDYVTDIRRML 282
           ++ DLT ++  +LD HLV PLLEFL  +  Y + E+L+AK+ +    NM+DY  DI +  
Sbjct: 2   AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSR 61

Query: 283 YPEEDTPEEIIQRRGVVLSELQELQDAXEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 462
           Y  +D PE++++RR  V+S L  L +A + + +  Q       IET+             
Sbjct: 62  YGTDDVPEDMVKRRAEVVSRLTSLGEAIDNIHQNQQIGP--DQIETL------------- 106

Query: 463 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 642
             Y++           AK++++CGNY  +A YL+  + + +  +++ LS LWGKLA+EIL
Sbjct: 107 --YQY-----------AKFQFDCGNYSFAAQYLHQYRALCTNIERS-LSALWGKLAAEIL 152

Query: 643 VQNWDGALDDLTKLREFIDN 702
           +QNWD AL++L +L+E ID+
Sbjct: 153 MQNWDVALEELNRLKEIIDS 172


>07_03_0517 +
           19000050-19000427,19000539-19000766,19001142-19001221,
           19001222-19001441,19001571-19001713,19002023-19002160,
           19002295-19002376
          Length = 422

 Score =  115 bits (276), Expect = 4e-26
 Identities = 65/209 (31%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
 Frame = +1

Query: 103 SKFDLTXKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEIXSKX-NMIDYVTDIR 273
           ++ DLT ++  +++ HLVFPLLEFL  +    Y   E+LQAKL +  +  NM+DY  D  
Sbjct: 2   AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61

Query: 274 RMLYPEED------TPEEIIQRRGVVLSELQELQDAXEPVLRLMQRDDVMKTIETMRDPK 435
           ++L+ + D       P+++++RR  V++ L  L     P++  ++   +         P 
Sbjct: 62  KLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPD 113

Query: 436 TLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVL 615
              N    ++ ++   + I+++Y+ AK++++CGNY ++A  L+  + + + ++++ LS  
Sbjct: 114 KEHNIRMLHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS-LSAQ 172

Query: 616 WGKLASEILVQNWDGALDDLTKLREFIDN 702
           WGKL++EIL  NWD AL++L  L+E ID+
Sbjct: 173 WGKLSAEILNNNWDVALEELNCLKEMIDS 201


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = -1

Query: 427 PSWFQL----FSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQD 284
           PS F+L    FSL  L A VS ++L H E   +P+++H  +   L+ C+ +D
Sbjct: 367 PSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSP--LEACVQKD 416


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 400 VMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 522
           V+  +ET   P TL+  L+TNK+Y  K     SMYR   +R
Sbjct: 127 VIDNLETSPVPDTLLWGLATNKKYTTK-----SMYRTLTFR 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,575
Number of Sequences: 37544
Number of extensions: 295270
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)