Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c18
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 146 2e-35
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 31 0.61
Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical pr... 30 1.4
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 27 9.9
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 27 9.9
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 27 9.9
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 146 bits (353), Expect = 2e-35
Identities = 71/202 (35%), Positives = 124/202 (61%), Gaps = 3/202 (1%)
Frame = +1
Query: 103 SKFDLTXKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEIXSKXNMIDYVTDIRRML 282
S FDLT ++ +LD HL+ PLLEF+ + YD+ L + ++ +K NMID V +
Sbjct: 2 STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIET---- 57
Query: 283 YPEEDTPEEIIQRRGVVLSELQELQDAXEPVLRLMQRDDVMKTIETMRDPK---TLINHL 453
Y + P I ++ ++ E EL+ + V+ +++ +V + ++ R+ ++ HL
Sbjct: 58 YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117
Query: 454 STNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAS 633
+ N + F ++M+D++++ +K+ YECGNY ++ LY+ + +++ D NYL+ L+GKLAS
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175
Query: 634 EILVQNWDGALDDLTKLREFID 699
EIL+Q W+ A DDL KLR +ID
Sbjct: 176 EILLQEWEHARDDLLKLRAYID 197
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = -2
Query: 495 IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLXCILKFLQFRKNYTSPL 316
++H + K I C + V ++ H F +++++ + S+Y + I+ LQ+ TS
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782
Query: 315 YNFFRSVFFRIEHSSDV 265
YN F + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799
>Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical
protein T16H12.2 protein.
Length = 181
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 256 YVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAXEP 372
+V + +LYP++DTP +I++ R L Q+ +D EP
Sbjct: 122 HVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 139 LDRHLVFPLLEFLAAKETYDQSELLQAKLEIXSKXNMIDYVTDIRRMLYPEEDTP 303
L R ++ L EF +TY E L+AKLE + + + ++ PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 463 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 642
K Y+ + ID ++RLAK+ E GN VE +++ K Y + W ++ L
Sbjct: 130 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 184
Query: 643 VQNW----DGALDDLTKLREFIDNG 705
W G + + +E I+ G
Sbjct: 185 AARWAALMSGKVTEYLGTKEKIEEG 209
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 463 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 642
K Y+ + ID ++RLAK+ E GN VE +++ K Y + W ++ L
Sbjct: 71 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 125
Query: 643 VQNW----DGALDDLTKLREFIDNG 705
W G + + +E I+ G
Sbjct: 126 AARWAALMSGKVTEYLGTKEKIEEG 150
>Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical
protein F56D5.3 protein.
Length = 449
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 472 EFKIEMIDSMYRLAKYRYECG-NYVE-SASYLYFCQLVMSPTDKNYLSVLWGKL--ASEI 639
+ K E++D AK+ YECG + V+ ++ Y SPT N G + + +
Sbjct: 166 QIKTEVVDRFVYAAKFAYECGFDGVQLHGAHGYLLTQFTSPTTNNRNDKYGGSIENRNRV 225
Query: 640 LVQNWDGALDDLTKLREFI 696
+++ +D ++ + F+
Sbjct: 226 IIEIYDEIRKEIPETSGFL 244
>Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical
protein K01C8.8 protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 496 SMYRLAKYRYECGNYVESASYLYFCQLVMSPT-DKNYLSVLWGKLASEILVQ 648
S Y + +YR + ++ S S+LY +L P+ N V W K +I+++
Sbjct: 298 STYVIPEYRLDYYDFEGSNSFLYDIRLSQDPSIAGNVAIVFWNKKLKQIILK 349
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 331 VLSELQELQDAXEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDS 498
+++ L L+ E + L + + KT++T+ K L+N + TN ++E + S
Sbjct: 358 IIAPLTYLESIKEVEILLQAIESLKKTVDTLVGTKELVNWVKTNDVVLKEVEALCS 413
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 646 VPKFR*PIYPKEPTNNSCQLATSPVD 569
V +FR P Y +PT+NS L P+D
Sbjct: 47 VGQFRRPRYSADPTSNSTDLQLRPLD 72
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 646 VPKFR*PIYPKEPTNNSCQLATSPVD 569
V +FR P Y +PT+NS L P+D
Sbjct: 215 VGQFRRPRYSADPTSNSTDLQLRPLD 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,608
Number of Sequences: 27780
Number of extensions: 287471
Number of successful extensions: 857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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