Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c17
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...   154   2e-36
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...   135   8e-31
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...    92   1e-17
UniRef50_P41701 Cluster: Occlusion-derived virus envelope protei...    57   3e-07
UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentali...    49   8e-05
UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 - A...    49   1e-04
UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:...    45   0.002
UniRef50_O10371 Cluster: Occlusion-derived virus envelope protei...    43   0.006
UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5; Nucleopolyh...    43   0.007
UniRef50_Q8IKD8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.84 
UniRef50_O82508 Cluster: F2P3.15 protein; n=3; Arabidopsis thali...    33   5.9  
UniRef50_Q8IK87 Cluster: Putative uncharacterized protein; n=2; ...    33   7.8  

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score =  154 bits (373), Expect = 2e-36
 Identities = 71/95 (74%), Positives = 86/95 (90%)
 Frame = +2

Query: 365 MKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLST 544
           MKRV+CNKVRTVTE+  ++ KI+KTY+L EFDLKNLSSLES+E  K+KLALSKYMAM++T
Sbjct: 1   MKRVRCNKVRTVTEVKPNNAKIRKTYDLNEFDLKNLSSLESFENTKVKLALSKYMAMINT 60

Query: 545 LEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRF 649
           LEMTQPLLE+FRN+ADTRQI AVV +T+ F+HNRF
Sbjct: 61  LEMTQPLLEVFRNRADTRQIVAVVQATMGFVHNRF 95


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score =  135 bits (327), Expect = 8e-31
 Identities = 64/97 (65%), Positives = 81/97 (83%), Gaps = 3/97 (3%)
 Frame = +2

Query: 365 MKRVKCN---KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 535
           MKR KC    KVRTVTEI+NSD+K+QK Y+L EFD+KNL+SLESY+TLKIKL + KYMAM
Sbjct: 1   MKRFKCQSTPKVRTVTEIINSDDKLQKEYDLTEFDVKNLNSLESYDTLKIKLVIVKYMAM 60

Query: 536 LSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNR 646
           L+TL++TQPLL IFR++  TR+I  VV ++L F+HNR
Sbjct: 61  LNTLQLTQPLLTIFRDRNATREIVTVVLASLGFVHNR 97


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score = 91.9 bits (218), Expect = 1e-17
 Identities = 43/88 (48%), Positives = 62/88 (70%)
 Frame = +2

Query: 383 NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 562
           NKVRTVTEIVN  +K+ K +EL E + KNL+SL SY+    ++ L+KY+AML  LE +Q 
Sbjct: 5   NKVRTVTEIVNGHDKLTKEFELDELNDKNLNSLVSYDNFNTRMVLAKYIAMLHMLETSQS 64

Query: 563 LLEIFRNKADTRQIAAVVFSTLAFIHNR 646
           L+  FR++   R+I  +V ++LAF+H R
Sbjct: 65  LIATFRDRNAAREIVQIVHNSLAFVHQR 92


>UniRef50_P41701 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Autographa californica
           nuclear polyhedrosis virus (AcMNPV)
          Length = 62

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 26/30 (86%), Positives = 28/30 (93%), Gaps = 1/30 (3%)
 Frame = +3

Query: 261 PPSATG-FMNPLNATMRANPFMNTPQRQML 347
           PP+A G F+NPLNATMRANPFMNTPQRQML
Sbjct: 33  PPNALGGFVNPLNATMRANPFMNTPQRQML 62


>UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentalis
           granulovirus|Rep: ODV-E27 - Choristoneura occidentalis
           granulovirus
          Length = 284

 Score = 49.2 bits (112), Expect = 8e-05
 Identities = 26/90 (28%), Positives = 53/90 (58%)
 Frame = +2

Query: 377 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMT 556
           K +  RTVTEIV+S+   +K +++ + + KN + L+  +  ++ L ++KY   +   E+ 
Sbjct: 10  KVDSYRTVTEIVDSENFYKKEFDVTDLEYKNEAYLQKNKKRQLFLMVAKYFVEV-VKELN 68

Query: 557 QPLLEIFRNKADTRQIAAVVFSTLAFIHNR 646
            P + +  +  +T +I   V+ +LAFI+N+
Sbjct: 69  IPDIRVLFDSNETDKIFTFVYYSLAFINNQ 98


>UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 -
           Agrotis segetum granulosis virus (AsGV) (Agrotis
           segetumgranulovirus)
          Length = 298

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 27/90 (30%), Positives = 50/90 (55%)
 Frame = +2

Query: 377 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMT 556
           K    RTVTEI +++    K Y++++   KN +     E  ++ L LSKY+AM+  L++ 
Sbjct: 14  KVENYRTVTEITDAENSYSKRYDVSDLVNKNEAYQRQQEKREMYLMLSKYVAMVLDLKLP 73

Query: 557 QPLLEIFRNKADTRQIAAVVFSTLAFIHNR 646
             L  +F +      I ++V+ +LAF++ +
Sbjct: 74  D-LKILFGSNGTPEAILSLVYHSLAFVNTQ 102


>UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:
           ODV-E18 - Mamestra configurata NPV-A
          Length = 83

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +3

Query: 261 PPSATG--FMNPLNATMRANPFMNTPQRQML 347
           PP   G  F+NPLNATMRANPF+N  QR ML
Sbjct: 53  PPGGGGNTFVNPLNATMRANPFVNPAQRNML 83


>UniRef50_O10371 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 85

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +3

Query: 45  MIYXXXXXXXXXXXDVQSANYLNRLTPNMFLTXXXXXXXXXXXXMFVQXXXXXXXXXXXX 224
           MIY           D    NYLNRLTPN FL             +F+Q            
Sbjct: 1   MIYTDPATGATTNTDAAGNNYLNRLTPNTFLIILAVVVIVALIIIFMQSSSNGNNS---- 56

Query: 225 XXXXXXXXXXXTPPSATGFMN-PLNATMRANPFMNTPQR 338
                      + P+A   M  PLN TMRANPF+ TPQR
Sbjct: 57  -----------SSPAAVPQMGFPLNTTMRANPFVATPQR 84


>UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5;
           Nucleopolyhedrovirus|Rep: LdOrf-odv-e18 peptide -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 88

 Score = 42.7 bits (96), Expect = 0.007
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 264 PSATGFMNPLNATMRANPFMNTPQRQML 347
           P    + NPLNATMRANPF+N  QR ML
Sbjct: 61  PQRYAYTNPLNATMRANPFVNNAQRSML 88


>UniRef50_Q8IKD8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 398

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = +2

Query: 323 EHASKANVVDKCIKMKRVKCNKV--RTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYET 496
           EH ++   V K ++ K  KCNKV    + E   + +KIQ+  E   +    +  LE  E 
Sbjct: 209 EHINEKENVIKGLEEKIQKCNKVIKDKIEENETNKKKIQQQNEKINYINDKIQDLER-EQ 267

Query: 497 LKIKLALSKYMAMLSTLEMTQPLLEIFRNKAD 592
              K  + KY+  + TL+ T  ++E  + KAD
Sbjct: 268 KNDKEKIKKYIEKIKTLKKTSTIME-EKKKAD 298


>UniRef50_O82508 Cluster: F2P3.15 protein; n=3; Arabidopsis
           thaliana|Rep: F2P3.15 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 279

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
 Frame = +2

Query: 281 YESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFD 460
           YE+ K +H + +     S   ++++C+K +R K  KVR   E +    + ++T  + E  
Sbjct: 33  YEAIKLHHENKAKELEVSNKRLLEECMKERREKA-KVRKTFEEMKKTMESERTAIVDELK 91

Query: 461 LKNLSSL--ESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTL 628
            KN   L  +  E  ++    +KY+ +    ++ +      ++  D   +A+V  S +
Sbjct: 92  SKNQELLLGKKKEEEELVKMENKYVELAEKFDVVEKECAYLKSLYDAEVVASVTQSAV 149


>UniRef50_Q8IK87 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1526

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
 Frame = +2

Query: 347 VDKCIKMKRVKC--NKVRTVTEIVNSDEKIQKT----YELAEFDLKNLS 475
           V K +K +++K    K++ + EIVN++E + K     Y+L  FDLKN++
Sbjct: 126 VQKILKEQKIKEPEKKIKRIQEIVNNEENLNKKFNQFYDLFCFDLKNIN 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,682,710
Number of Sequences: 1657284
Number of extensions: 8881650
Number of successful extensions: 22134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22129
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)