Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c12
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.9  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    21   6.9  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   6.9  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   6.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 489 VFRYILSRVYKKTLHCMTPLKVSSHCSVHCFFY 391
           +F Y L+ +YKK      PL +        FFY
Sbjct: 278 LFYYQLTDLYKKIKKAFPPLSLHGQLLWREFFY 310


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +1

Query: 328 YPGGASWTLAWELHNKDPTMIIKKAVYRAMT---GNLQRRH 441
           YP   SWTL     ++   ++I +A  R  T    N+Q  H
Sbjct: 632 YPLNISWTLNGHFIDQTNGIVINRASKRVSTLSIDNVQSTH 672


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +1

Query: 220  YHPMNDCGDVVVCIN 264
            Y+P   C    VC+N
Sbjct: 1212 YYPHESCSSFYVCVN 1226


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 181 RERIHKDLAICSRICANYEQM 119
           RER+    AIC     NY +M
Sbjct: 113 RERVEDAYAICELAMYNYVEM 133


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 181 RERIHKDLAICSRICANYEQM 119
           RER+    AIC     NY +M
Sbjct: 346 RERVEDAYAICELAMYNYVEM 366


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 181 RERIHKDLAICSRICANYEQM 119
           RER+    AIC     NY +M
Sbjct: 346 RERVEDAYAICELAMYNYVEM 366


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 59  STSKH*DIQCQQRNEYSNGQH 121
           S+S+  DI C+   ++S+G+H
Sbjct: 29  SSSRILDIPCKVCGDFSSGKH 49


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 59  STSKH*DIQCQQRNEYSNGQH 121
           S+S+  DI C+   ++S+G+H
Sbjct: 29  SSSRILDIPCKVCGDFSSGKH 49


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 159 LPFAVEYVPTTSKCCPLLYS-FRC 91
           L    E +PTTS   PL+ + F C
Sbjct: 257 LNLVAEKIPTTSDAVPLIGTYFNC 280


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 159 LPFAVEYVPTTSKCCPLLYS-FRC 91
           L    E +PTTS   PL+ + F C
Sbjct: 257 LNLVAEKIPTTSDAVPLIGTYFNC 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,247
Number of Sequences: 336
Number of extensions: 3943
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)