Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c12
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 79 6e-16
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 29 0.80
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 3.2
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.2
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 27 3.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.2
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 5.6
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 7.4
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 25 7.4
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.4
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 25 7.4
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 25 9.8
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 25 9.8
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 9.8
>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
L13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 79.0 bits (186), Expect = 6e-16
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +1
Query: 121 FARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWR 300
+A+ WH K A I LMG HKPIYHP DCGDVVV + EI + G +
Sbjct: 12 YAKVWHHVSAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLE 71
Query: 301 KRAYFHHTGYPGG-ASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGEN 477
Y+ H+G PG WT+ + ++++AV + N M+RL+IY G
Sbjct: 72 NHKYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAE 131
Query: 478 VP 483
P
Sbjct: 132 HP 133
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.80
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 118 TFARSWHIFDCKWQDPYESAHVIKKYLM 201
T ++W D KW +P++ H +K +L+
Sbjct: 289 TTGQAWQFRDYKWSEPHQLFHHVKGFLV 316
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 309 LFPPHWIPWRCFVDFSMGVT*QGSNHDHKKSSVQSNDWKPSEASYN 446
LF P I +R +F G+ + SNHDH K S KP+ A N
Sbjct: 905 LFTPEKI-YRKLREFRRGLEGK-SNHDHSKDRRHSRARKPAYADRN 948
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 154 WQDPYESAHVIKKYLMGMHKPIYHPM 231
W+D Y++ ++K+Y P Y P+
Sbjct: 425 WEDAYQTYQLLKEYESAFEAPAYGPI 450
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/74 (22%), Positives = 30/74 (40%)
Frame = +1
Query: 364 LHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVPEDVLQNVTNQIRQIRYVPKR 543
+H D T ++ A + L + T + +IYP VPE + + Y+ +
Sbjct: 517 VHFNDDTSLLFSADEEVVEYALHPKDTEIKPYIYPASKVPESIRSKLQLLKHFKSYMGQN 576
Query: 544 LDHIPEEEVKNYPK 585
L ++E PK
Sbjct: 577 LSKAVQDESFEKPK 590
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 475 NVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEVKNYP 582
N D L N N+ + + K L H+ E V N P
Sbjct: 714 NTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLP 749
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 228 YERLWRCCCLYK 263
YE LWRC C+ K
Sbjct: 327 YETLWRCACIKK 338
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 315 PPHWIPWRCFVDFSMGV 365
PP ++PW F+ F +G+
Sbjct: 577 PPKFLPWVSFIGFVLGI 593
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 133 WHIFDCKWQ-DPYESAHVIKKYLMGMHKPI-YHPMNDCGDVVVCINSREIA 279
W++ + K+ +P + + + L G+ P Y ND D +VC S IA
Sbjct: 427 WYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIA 477
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/68 (22%), Positives = 30/68 (44%)
Frame = +1
Query: 391 IKKAVYRAMTGNLQRRHTMQRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEV 570
I +V A+ NL++ + I +N + T+ + Q+RY + + H +E
Sbjct: 797 IANSVRNALKNNLEKIESFLENSIAELQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESE 856
Query: 571 KNYPKVME 594
Y ++ E
Sbjct: 857 VKYNELNE 864
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 288 ASKSYLSTIYTDNNISTIVHRMVYGFV 208
ASK ++ I + +S + M+YGF+
Sbjct: 153 ASKDFIDLIGAHSEVSLFITPMIYGFI 179
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 312 ISTFPPLVASKSYLSTIYTDN 250
+S+FP LV+ KS +T+ +DN
Sbjct: 33 LSSFPALVSEKSQNTTVESDN 53
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 379 PTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENV 480
P+ I K ++R N RH ++ LF YPG+ V
Sbjct: 278 PSWITKDDLFRGPLVN--HRHLIKILFQYPGQTV 309
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 190 FL*RERIHKDLAICSRICANYEQMLPIAVLVSLLTLYILMLR 65
F+ RERIH++ A + + +L +LVS+ I L+
Sbjct: 149 FVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLK 190
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 300 PPLVASKSYLSTIYTDNNISTIVHRMVYGFVHAHQIFFY 184
PP S YL+ Y I T H V A Q+ FY
Sbjct: 493 PPFRYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFY 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,373
Number of Sequences: 5004
Number of extensions: 62338
Number of successful extensions: 183
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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