Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c12
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362...    73   2e-13
05_03_0120 - 8597333-8597554,8599413-8599524,8599607-8599773,859...    72   5e-13
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572...    58   6e-09
03_05_0614 - 26129627-26129784,26130110-26130282,26131236-261312...    28   5.8  

>08_01_0409 +
           3625071-3625228,3625829-3625905,3626310-3626889,
           3626974-3627111,3627318-3627387,3627449-3627933,
           3628681-3628890,3629259-3629326,3629855-3629961,
           3630275-3630346,3630448-3630614,3630709-3630820,
           3631464-3631650,3632174-3632286
          Length = 847

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 40/117 (34%), Positives = 59/117 (50%)
 Frame = +1

Query: 133 WHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWRKRAY 312
           W +FD K Q     A  I   L G  KP Y P  + GD+ V +N+++I++ G +   + Y
Sbjct: 647 WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 706

Query: 313 FHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVP 483
           + HTGY G        +   KDPT +I+KAV R +  N  R    ++L I+ G   P
Sbjct: 707 YWHTGYIGHLKERRLKDQMEKDPTEVIRKAVMRMLPRNRLRDDRDRKLRIFSGSEHP 763


>05_03_0120 -
           8597333-8597554,8599413-8599524,8599607-8599773,
           8599857-8599928,8600748-8600780,8601051-8601089
          Length = 214

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 40/117 (34%), Positives = 58/117 (49%)
 Frame = +1

Query: 133 WHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWRKRAY 312
           W +FD K Q     A  I   L G  KP Y P  + GD+ V +N+++I++ G +   + Y
Sbjct: 40  WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 99

Query: 313 FHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVP 483
           + HTGY G        +   KDPT  I+KAV R +  N  R    ++L I+ G   P
Sbjct: 100 YWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMRMLPRNRLRDDRDRKLRIFSGNEHP 156


>01_06_0707 +
           31355929-31356244,31356766-31356992,31357081-31357257,
           31357355-31357510,31357778-31358054,31358192-31358306,
           31360349-31360634,31361196-31361381,31361663-31361833,
           31362307-31362426
          Length = 676

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 35/137 (25%), Positives = 61/137 (44%)
 Frame = +1

Query: 118 TFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEW 297
           T  ++W++ D   +     A  I  ++ G ++  Y P  D G  VV +N+ ++A+ G + 
Sbjct: 534 TTEKTWYVVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKR 593

Query: 298 RKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGEN 477
            ++ Y  H+G PGG       +L  + P  II+ AV   +      R     L +Y G  
Sbjct: 594 SQKLYRRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAE 653

Query: 478 VPEDVLQNVTNQIRQIR 528
            P +  + V   I+  R
Sbjct: 654 HPHEAQKPVPLPIKDKR 670


>03_05_0614 -
           26129627-26129784,26130110-26130282,26131236-26131284,
           26132649-26132697,26132987-26133082
          Length = 174

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 244 DVVVCINSREIALRGDEWRKRAYFHHTGYPGGASW 348
           D V+ I  +    RG+EW ++   HH   P G  W
Sbjct: 104 DTVITIEEK----RGEEWCRKKLGHHAASPKGPCW 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,595
Number of Sequences: 37544
Number of extensions: 378769
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)