Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c12
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2992|AAF53719.2|  178|Drosophila melanogaster CG10603-P...   298   5e-81
AY051745-1|AAK93169.1|  684|Drosophila melanogaster LD27070p pro...    92   7e-19
AE014134-2988|AAF53718.2|  684|Drosophila melanogaster CG10602-P...    92   7e-19
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros...    30   2.5  
DQ431841-1|ABD83643.1|  368|Drosophila melanogaster UNC-89 protein.    28   9.9  

>AE014134-2992|AAF53719.2|  178|Drosophila melanogaster CG10603-PA
           protein.
          Length = 178

 Score =  298 bits (731), Expect = 5e-81
 Identities = 123/175 (70%), Positives = 152/175 (86%)
 Frame = +1

Query: 85  MSAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCIN 264
           MS AKRVQQWATFAR+WHI+DC WQ+P+ESA ++K +L+G+ KPIYHPMNDCGD VV IN
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLIN 60

Query: 265 SREIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHT 444
           +REIAL GDEW KR YFHHTGYPGGASWTLAW+LH KDPTM++KKAVY +M GNLQRRHT
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTMVMKKAVYNSMRGNLQRRHT 120

Query: 445 MQRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEVKNYPKVMEYPEDF 609
           MQRL ++  + VPE++LQNVTNQIR  R +P+RLDHI +E ++N+P +M+YP+D+
Sbjct: 121 MQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRLDHIDKETLENFPNIMDYPKDY 175


>AY051745-1|AAK93169.1|  684|Drosophila melanogaster LD27070p
           protein.
          Length = 684

 Score = 91.9 bits (218), Expect = 7e-19
 Identities = 35/49 (71%), Positives = 44/49 (89%)
 Frame = +1

Query: 85  MSAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPM 231
           MS AKRVQQWATFAR+WHI+DC WQ+P+ESA ++K +L+G+ KPIYHPM
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPM 49


>AE014134-2988|AAF53718.2|  684|Drosophila melanogaster CG10602-PA,
           isoform A protein.
          Length = 684

 Score = 91.9 bits (218), Expect = 7e-19
 Identities = 35/49 (71%), Positives = 44/49 (89%)
 Frame = +1

Query: 85  MSAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPM 231
           MS AKRVQQWATFAR+WHI+DC WQ+P+ESA ++K +L+G+ KPIYHPM
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPM 49


>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
           Drosophila melanogastertransposable element 297. ).
          Length = 1059

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +1

Query: 364 LHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVPEDVLQNVTNQIRQIRYVPKR 543
           ++ K+ T+ +    Y+ +T   +R    Q L+I   +  PE +  +    I+++ +   R
Sbjct: 106 INYKNDTVTLFDQTYKLITSESERN---QNLYI---QRTPESIASSDQESIKKLDFSQFR 159

Query: 544 LDHIPEEE 567
           LDH+ +EE
Sbjct: 160 LDHLNQEE 167


>DQ431841-1|ABD83643.1|  368|Drosophila melanogaster UNC-89 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 HVIKKYLMGMHKPIY-HPMNDCGDVVVCINSREIA 279
           HV++KY+ G+ KP+    + D  D++ C N  +IA
Sbjct: 23  HVVEKYIKGIDKPVVPRSVRDNKDIIFC-NFLQIA 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,162,745
Number of Sequences: 53049
Number of extensions: 658920
Number of successful extensions: 1590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)